MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.2 nTPM
HPA Brain:15.4 nTPM
GTEx:24.2 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:57.3 nTPM
Mouse:2.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
1833 Male, age 53, unknown 14.9
1870 Female, age 42, unknown 14.3
1830 Male, age 51, unknown 13.9
2411 Female, age 72, unknown 13.7
2666 Male, age 74, left hemisphere 12.9
1827 Male, age 72, unknown 12.8
2019 Male, age 18, unknown 12.2
2828 Female, age 72, unknown 11.1
2219 Male, age 76, both hemispheres 10.3
2586 Male, age 75, left hemisphere 9.5
Dorsal raphe nucleus
nTPM: 15.4
2298 Female, age 72, unknown 18.2
2016 Female, age 72, unknown 15.5
2750 Male, age 76, both hemispheres 14.8
2047 Male, age 72, unknown 14.3
1828 Male, age 53, unknown 14.1
Inferior colliculus
nTPM: 12.3
2849 Male, age 72, unknown 12.9
1848 Female, age 42, unknown 12.5
1890 Male, age 53, unknown 12.4
2097 Female, age 72, unknown 11.7
Median raphe nucleus
nTPM: 12.8
2220 Male, age 76, midline 12.8
Periaquaductal grey, anterior
nTPM: 11.9
1795 Male, age 51, unknown 13.4
1947 Male, age 18, unknown 12.8
2502 Female, age 75, unknown 9.5
Periaquaductal grey, dorsal
nTPM: 14.4
1840 Male, age 53, unknown 17.1
1831 Male, age 72, unknown 14.2
2464 Female, age 72, unknown 13.7
2850 Male, age 76, both hemispheres 12.6
Periaquaductal grey, lateral
nTPM: 13.2
2053 Male, age 18, unknown 13.7
2140 Male, age 76, both hemispheres 13.7
2272 Male, age 74, both hemispheres 12.4
Pretectal area
nTPM: 12.8
2316 Male, age 76, right hemisphere 17.9
2407 Male, age 75, both hemispheres 17.4
2273 Male, age 74, both hemispheres 13.5
2667 Female, age 75, unknown 13.5
2007 Male, age 72, unknown 12.8
2224 Female, age 72, unknown 12.7
2825 Male, age 18, unknown 12.3
1944 Female, age 72, unknown 10.6
1817 Female, age 42, unknown 10.4
1815 Male, age 53, unknown 10.0
1816 Male, age 51, unknown 9.9
Red nucleus
nTPM: 12.4
2725 Female, age 75, unknown 15.6
1821 Female, age 72, unknown 14.1
2584 Male, age 75, left hemisphere 14.0
2823 Male, age 76, right hemisphere 13.4
2227 Male, age 72, unknown 13.1
2769 Male, age 72, unknown 12.1
1904 Male, age 53, unknown 12.0
1865 Male, age 51, unknown 11.7
2503 Female, age 72, unknown 11.5
1954 Female, age 42, unknown 11.2
2588 Male, age 74, left hemisphere 10.1
2785 Male, age 18, unknown 9.6
Substantia nigra
nTPM: 14.8
2699 Male, age 18, unknown 20.3
2665 Male, age 74, both hemispheres 18.2
1916 Female, age 42, unknown 17.9
1851 Male, age 51, unknown 15.1
2241 Male, age 72, unknown 14.2
2590 Female, age 75, unknown 13.9
1941 Male, age 53, unknown 13.8
2583 Male, age 75, right hemisphere 12.8
1889 Female, age 72, unknown 11.7
2409 Female, age 72, unknown 10.3
Superior colliculus
nTPM: 12.8
2587 Male, age 74, left hemisphere 15.9
1913 Female, age 42, unknown 14.9
1895 Male, age 76, right hemisphere 13.9
2664 Male, age 75, both hemispheres 12.5
1995 Male, age 72, unknown 12.4
2668 Female, age 75, unknown 12.1
1796 Male, age 53, unknown 12.0
1839 Male, age 51, unknown 12.0
2087 Female, age 72, unknown 11.8
2261 Male, age 18, unknown 10.6
Ventral tegmental area
nTPM: 14.0
2218 Male, age 76, both hemispheres 15.4
2021 Male, age 53, unknown 15.2
1942 Male, age 51, unknown 15.0
1915 Female, age 42, unknown 14.5
2410 Female, age 72, unknown 12.5
2223 Female, age 72, unknown 11.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.2
Samples: 139

Max nTPM: 59.0
Min nTPM: 8.5
Std nTPM: 9.5
Median nTPM: 22.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 59.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 58.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 49.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 49.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 46.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 45.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 44.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 41.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 40.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 39.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.9
FF:10158-103A5 76 years, female 26.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 57.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.1
Samples: 4

Max nTPM: 59.6
Min nTPM: 38.0
Sample A Female 46.7
Sample B Female 59.6
Sample C Male 52.0
Sample D Male 38.0
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 59.2
Min nTPM: 19.0
Sample A Female 46.7
Sample B Female 59.2
Sample C Male 19.0
Sample D Male 21.3
Periaqueductal gray
nTPM: 57.3
Samples: 3

Max nTPM: 68.2
Min nTPM: 50.5
Sample B Female 50.5
Sample C Male 68.2
Sample D Male 53.2
Superior colliculi
nTPM: 27.0
Samples: 4

Max nTPM: 35.1
Min nTPM: 22.6
Sample A Female 35.1
Sample B Female 22.6
Sample C Male 26.3
Sample D Male 23.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.9
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.6
Sample A Male 3.3
Sample B Male 2.6
Sample C Female 2.6
Sample D Female 2.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68203468 Antisense, RP_041208_01_B03, Mouse strain C57BL/6J (56 days, male) 0.1

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