MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.2 nTPM
HPA Brain:75.1 nTPM
GTEx:39.2 nTPM
FANTOM5:319.9 Scaled Tags Per Million
Pig:285.9 nTPM
Mouse:81.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 75.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.7
2666 Male, age 74, left hemisphere 67.3
1833 Male, age 53, unknown 55.0
1870 Female, age 42, unknown 53.3
1830 Male, age 51, unknown 52.9
1827 Male, age 72, unknown 50.8
2586 Male, age 75, left hemisphere 49.4
2219 Male, age 76, both hemispheres 48.9
2828 Female, age 72, unknown 47.3
2019 Male, age 18, unknown 46.0
2411 Female, age 72, unknown 36.5
Dorsal raphe nucleus
nTPM: 43.1
2750 Male, age 76, both hemispheres 50.4
1828 Male, age 53, unknown 45.8
2016 Female, age 72, unknown 41.9
2047 Male, age 72, unknown 38.9
2298 Female, age 72, unknown 38.8
Inferior colliculus
nTPM: 45.0
2849 Male, age 72, unknown 57.2
1848 Female, age 42, unknown 52.7
1890 Male, age 53, unknown 35.2
2097 Female, age 72, unknown 34.9
Median raphe nucleus
nTPM: 75.1
2220 Male, age 76, midline 75.1
Periaquaductal grey, anterior
nTPM: 52.4
1947 Male, age 18, unknown 61.6
2502 Female, age 75, unknown 51.8
1795 Male, age 51, unknown 43.8
Periaquaductal grey, dorsal
nTPM: 48.3
2850 Male, age 76, both hemispheres 70.8
1840 Male, age 53, unknown 48.5
1831 Male, age 72, unknown 47.3
2464 Female, age 72, unknown 26.5
Periaquaductal grey, lateral
nTPM: 52.3
2140 Male, age 76, both hemispheres 68.7
2053 Male, age 18, unknown 49.2
2272 Male, age 74, both hemispheres 39.0
Pretectal area
nTPM: 51.1
2407 Male, age 75, both hemispheres 71.7
1816 Male, age 51, unknown 56.5
2667 Female, age 75, unknown 54.8
2316 Male, age 76, right hemisphere 54.5
2007 Male, age 72, unknown 53.7
1944 Female, age 72, unknown 53.3
1817 Female, age 42, unknown 50.0
1815 Male, age 53, unknown 46.3
2825 Male, age 18, unknown 44.1
2224 Female, age 72, unknown 39.0
2273 Male, age 74, both hemispheres 38.6
Red nucleus
nTPM: 52.5
2725 Female, age 75, unknown 65.5
2503 Female, age 72, unknown 61.7
1821 Female, age 72, unknown 59.0
1904 Male, age 53, unknown 56.6
1954 Female, age 42, unknown 56.1
2584 Male, age 75, left hemisphere 55.0
1865 Male, age 51, unknown 52.2
2227 Male, age 72, unknown 47.3
2769 Male, age 72, unknown 44.7
2785 Male, age 18, unknown 44.0
2823 Male, age 76, right hemisphere 44.0
2588 Male, age 74, left hemisphere 43.5
Substantia nigra
nTPM: 45.2
1916 Female, age 42, unknown 56.9
2699 Male, age 18, unknown 53.9
1889 Female, age 72, unknown 50.5
2665 Male, age 74, both hemispheres 47.1
1941 Male, age 53, unknown 44.0
1851 Male, age 51, unknown 43.2
2409 Female, age 72, unknown 41.1
2241 Male, age 72, unknown 40.7
2583 Male, age 75, right hemisphere 40.1
2590 Female, age 75, unknown 34.6
Superior colliculus
nTPM: 48.8
1839 Male, age 51, unknown 56.0
2664 Male, age 75, both hemispheres 55.1
1995 Male, age 72, unknown 51.7
2261 Male, age 18, unknown 51.6
1913 Female, age 42, unknown 51.5
1796 Male, age 53, unknown 48.5
2668 Female, age 75, unknown 45.8
1895 Male, age 76, right hemisphere 45.5
2087 Female, age 72, unknown 42.9
2587 Male, age 74, left hemisphere 39.4
Ventral tegmental area
nTPM: 49.5
2223 Female, age 72, unknown 72.7
1915 Female, age 42, unknown 55.6
2218 Male, age 76, both hemispheres 52.3
2021 Male, age 53, unknown 48.3
1942 Male, age 51, unknown 42.4
2410 Female, age 72, unknown 25.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.2
Samples: 139

Max nTPM: 78.3
Min nTPM: 17.9
Std nTPM: 12.2
Median nTPM: 36.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 78.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 76.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 72.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 71.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 70.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 64.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 64.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 63.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 62.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 58.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 58.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 319.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 319.9
FF:10158-103A5 76 years, female 319.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 285.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 230.3
Samples: 4

Max nTPM: 247.6
Min nTPM: 215.6
Sample A Female 215.6
Sample B Female 247.6
Sample C Male 215.8
Sample D Male 242.0
Midbrain
nTPM: 245.3
Samples: 4

Max nTPM: 274.9
Min nTPM: 218.6
Sample A Female 254.2
Sample B Female 274.9
Sample C Male 233.4
Sample D Male 218.6
Periaqueductal gray
nTPM: 285.9
Samples: 3

Max nTPM: 304.0
Min nTPM: 260.2
Sample B Female 304.0
Sample C Male 260.2
Sample D Male 293.4
Superior colliculi
nTPM: 212.7
Samples: 4

Max nTPM: 232.0
Min nTPM: 162.3
Sample A Female 162.3
Sample B Female 228.8
Sample C Male 232.0
Sample D Male 227.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.8
Samples: 4

Max nTPM: 89.8
Min nTPM: 72.5
Sample A Male 80.0
Sample B Male 89.8
Sample C Female 84.8
Sample D Female 72.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71325420 Antisense, RP_050825_02_H01, Mouse strain C57BL/6J (56 days, male) 0.0

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