MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1024.4 nTPM
HPA Brain:399.8 nTPM
GTEx:1024.4 nTPM
FANTOM5:289.3 Scaled Tags Per Million
Pig:882.5 nTPM
Mouse:1311.5 nTPM
Allen mouse:12.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 399.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 315.7
2411 Female, age 72, unknown 351.4
2666 Male, age 74, left hemisphere 342.7
1827 Male, age 72, unknown 339.4
2019 Male, age 18, unknown 334.3
1870 Female, age 42, unknown 325.3
2219 Male, age 76, both hemispheres 319.0
2828 Female, age 72, unknown 312.4
1833 Male, age 53, unknown 292.0
2586 Male, age 75, left hemisphere 270.8
1830 Male, age 51, unknown 269.9
Dorsal raphe nucleus
nTPM: 304.7
1828 Male, age 53, unknown 344.5
2298 Female, age 72, unknown 325.4
2750 Male, age 76, both hemispheres 297.9
2047 Male, age 72, unknown 297.2
2016 Female, age 72, unknown 258.5
Inferior colliculus
nTPM: 330.3
1890 Male, age 53, unknown 362.2
1848 Female, age 42, unknown 333.0
2097 Female, age 72, unknown 325.5
2849 Male, age 72, unknown 300.4
Median raphe nucleus
nTPM: 314.3
2220 Male, age 76, midline 314.3
Periaquaductal grey, anterior
nTPM: 314.0
1947 Male, age 18, unknown 334.3
2502 Female, age 75, unknown 306.2
1795 Male, age 51, unknown 301.6
Periaquaductal grey, dorsal
nTPM: 258.6
1840 Male, age 53, unknown 281.6
1831 Male, age 72, unknown 262.7
2464 Female, age 72, unknown 247.1
2850 Male, age 76, both hemispheres 243.0
Periaquaductal grey, lateral
nTPM: 253.0
2272 Male, age 74, both hemispheres 260.5
2053 Male, age 18, unknown 255.5
2140 Male, age 76, both hemispheres 243.1
Pretectal area
nTPM: 338.5
1817 Female, age 42, unknown 437.4
1944 Female, age 72, unknown 420.3
2007 Male, age 72, unknown 419.6
1816 Male, age 51, unknown 405.2
2667 Female, age 75, unknown 346.9
1815 Male, age 53, unknown 344.6
2825 Male, age 18, unknown 286.4
2224 Female, age 72, unknown 275.2
2273 Male, age 74, both hemispheres 269.6
2316 Male, age 76, right hemisphere 262.8
2407 Male, age 75, both hemispheres 255.9
Red nucleus
nTPM: 365.2
2503 Female, age 72, unknown 424.2
1821 Female, age 72, unknown 406.2
2785 Male, age 18, unknown 392.9
2588 Male, age 74, left hemisphere 387.8
2725 Female, age 75, unknown 374.3
1865 Male, age 51, unknown 368.6
2227 Male, age 72, unknown 365.8
2769 Male, age 72, unknown 358.8
1954 Female, age 42, unknown 354.8
1904 Male, age 53, unknown 336.1
2823 Male, age 76, right hemisphere 318.4
2584 Male, age 75, left hemisphere 294.1
Substantia nigra
nTPM: 399.8
1916 Female, age 42, unknown 526.0
2665 Male, age 74, both hemispheres 440.9
1889 Female, age 72, unknown 434.3
1851 Male, age 51, unknown 429.0
1941 Male, age 53, unknown 410.1
2241 Male, age 72, unknown 404.8
2409 Female, age 72, unknown 399.7
2699 Male, age 18, unknown 373.1
2590 Female, age 75, unknown 291.1
2583 Male, age 75, right hemisphere 289.5
Superior colliculus
nTPM: 311.4
2668 Female, age 75, unknown 394.7
2087 Female, age 72, unknown 383.1
1895 Male, age 76, right hemisphere 352.6
1796 Male, age 53, unknown 331.0
2587 Male, age 74, left hemisphere 330.3
2261 Male, age 18, unknown 303.1
1839 Male, age 51, unknown 280.5
1913 Female, age 42, unknown 271.2
1995 Male, age 72, unknown 242.0
2664 Male, age 75, both hemispheres 225.8
Ventral tegmental area
nTPM: 338.8
1915 Female, age 42, unknown 397.2
2410 Female, age 72, unknown 376.6
2218 Male, age 76, both hemispheres 359.3
1942 Male, age 51, unknown 328.7
2223 Female, age 72, unknown 325.7
2021 Male, age 53, unknown 245.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1024.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1024.4
Samples: 139

Max nTPM: 2619.5
Min nTPM: 552.7
Std nTPM: 310.8
Median nTPM: 965.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2619.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2337.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1907.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1824.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1694.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1592.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1588.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1586.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1560.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1547.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1525.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 289.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 289.3
FF:10158-103A5 76 years, female 289.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 882.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 674.7
Samples: 4

Max nTPM: 894.1
Min nTPM: 523.3
Sample A Female 894.1
Sample B Female 523.3
Sample C Male 692.1
Sample D Male 589.3
Midbrain
nTPM: 786.3
Samples: 4

Max nTPM: 1031.8
Min nTPM: 642.3
Sample A Female 778.9
Sample B Female 692.1
Sample C Male 1031.8
Sample D Male 642.3
Periaqueductal gray
nTPM: 536.8
Samples: 3

Max nTPM: 597.0
Min nTPM: 450.7
Sample B Female 562.7
Sample C Male 597.0
Sample D Male 450.7
Superior colliculi
nTPM: 882.6
Samples: 4

Max nTPM: 1098.4
Min nTPM: 688.9
Sample A Female 971.3
Sample B Female 688.9
Sample C Male 1098.4
Sample D Male 771.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1311.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1311.5
Samples: 4

Max nTPM: 1487.4
Min nTPM: 1158.6
Sample A Male 1487.4
Sample B Male 1227.3
Sample C Female 1158.6
Sample D Female 1372.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.4
69568980 Antisense, RP_050426_03_C01, Mouse strain C57BL/6J (56 days, male) 12.8
73992933 Antisense, RP_051214_03_C11, Mouse strain C57BL/6J (56 days, male) 12.0

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