MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.9 nTPM
HPA Brain:58.1 nTPM
GTEx:38.9 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:83.5 nTPM
Mouse:74.4 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.3
2586 Male, age 75, left hemisphere 51.3
2666 Male, age 74, left hemisphere 44.6
1827 Male, age 72, unknown 44.0
2411 Female, age 72, unknown 43.2
2219 Male, age 76, both hemispheres 42.2
2019 Male, age 18, unknown 41.8
1870 Female, age 42, unknown 40.0
2828 Female, age 72, unknown 39.7
1833 Male, age 53, unknown 39.5
1830 Male, age 51, unknown 37.1
Dorsal raphe nucleus
nTPM: 44.3
1828 Male, age 53, unknown 47.5
2298 Female, age 72, unknown 46.9
2047 Male, age 72, unknown 44.2
2750 Male, age 76, both hemispheres 42.3
2016 Female, age 72, unknown 40.8
Inferior colliculus
nTPM: 40.5
2097 Female, age 72, unknown 42.6
1890 Male, age 53, unknown 42.4
1848 Female, age 42, unknown 40.8
2849 Male, age 72, unknown 36.3
Median raphe nucleus
nTPM: 45.2
2220 Male, age 76, midline 45.2
Periaquaductal grey, anterior
nTPM: 45.4
1947 Male, age 18, unknown 49.4
2502 Female, age 75, unknown 45.2
1795 Male, age 51, unknown 41.7
Periaquaductal grey, dorsal
nTPM: 41.7
2850 Male, age 76, both hemispheres 45.3
1840 Male, age 53, unknown 42.1
1831 Male, age 72, unknown 40.3
2464 Female, age 72, unknown 39.1
Periaquaductal grey, lateral
nTPM: 39.1
2140 Male, age 76, both hemispheres 42.0
2053 Male, age 18, unknown 38.0
2272 Male, age 74, both hemispheres 37.4
Pretectal area
nTPM: 44.1
1816 Male, age 51, unknown 53.4
1817 Female, age 42, unknown 49.8
1944 Female, age 72, unknown 48.1
1815 Male, age 53, unknown 47.6
2007 Male, age 72, unknown 46.3
2667 Female, age 75, unknown 45.4
2825 Male, age 18, unknown 41.3
2224 Female, age 72, unknown 39.2
2316 Male, age 76, right hemisphere 38.5
2407 Male, age 75, both hemispheres 38.1
2273 Male, age 74, both hemispheres 37.4
Red nucleus
nTPM: 39.4
2725 Female, age 75, unknown 45.7
1821 Female, age 72, unknown 44.3
2584 Male, age 75, left hemisphere 43.0
2588 Male, age 74, left hemisphere 41.2
2785 Male, age 18, unknown 40.2
1954 Female, age 42, unknown 38.6
2503 Female, age 72, unknown 38.2
1865 Male, age 51, unknown 37.1
1904 Male, age 53, unknown 36.5
2823 Male, age 76, right hemisphere 36.2
2769 Male, age 72, unknown 36.1
2227 Male, age 72, unknown 35.6
Substantia nigra
nTPM: 58.1
2241 Male, age 72, unknown 83.6
1916 Female, age 42, unknown 77.5
1851 Male, age 51, unknown 63.4
2409 Female, age 72, unknown 63.4
2699 Male, age 18, unknown 53.7
2665 Male, age 74, both hemispheres 52.4
1889 Female, age 72, unknown 52.0
1941 Male, age 53, unknown 51.5
2590 Female, age 75, unknown 41.8
2583 Male, age 75, right hemisphere 41.7
Superior colliculus
nTPM: 40.7
2664 Male, age 75, both hemispheres 45.9
2668 Female, age 75, unknown 45.6
1796 Male, age 53, unknown 44.7
2087 Female, age 72, unknown 43.3
2261 Male, age 18, unknown 42.1
2587 Male, age 74, left hemisphere 41.8
1839 Male, age 51, unknown 41.2
1895 Male, age 76, right hemisphere 37.1
1995 Male, age 72, unknown 34.2
1913 Female, age 42, unknown 31.1
Ventral tegmental area
nTPM: 47.1
1915 Female, age 42, unknown 54.6
2218 Male, age 76, both hemispheres 51.3
2410 Female, age 72, unknown 50.5
1942 Male, age 51, unknown 44.0
2021 Male, age 53, unknown 43.2
2223 Female, age 72, unknown 39.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.9
Samples: 139

Max nTPM: 74.1
Min nTPM: 20.6
Std nTPM: 10.0
Median nTPM: 36.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 74.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 69.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 62.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 60.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 58.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 56.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 55.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 55.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.9
FF:10158-103A5 76 years, female 37.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.4
Samples: 4

Max nTPM: 94.6
Min nTPM: 58.7
Sample A Female 94.6
Sample B Female 62.4
Sample C Male 90.0
Sample D Male 58.7
Midbrain
nTPM: 76.9
Samples: 4

Max nTPM: 95.5
Min nTPM: 59.6
Sample A Female 59.6
Sample B Female 71.9
Sample C Male 95.5
Sample D Male 80.4
Periaqueductal gray
nTPM: 66.0
Samples: 3

Max nTPM: 77.0
Min nTPM: 56.9
Sample B Female 64.0
Sample C Male 77.0
Sample D Male 56.9
Superior colliculi
nTPM: 83.5
Samples: 4

Max nTPM: 97.5
Min nTPM: 63.9
Sample A Female 97.5
Sample B Female 63.9
Sample C Male 87.1
Sample D Male 85.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.4
Samples: 4

Max nTPM: 76.7
Min nTPM: 72.9
Sample A Male 72.9
Sample B Male 73.3
Sample C Female 76.7
Sample D Female 74.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
70429375 Antisense, RP_050614_01_E08, Mouse strain C57BL/6J (56 days, male) 3.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org