MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.3 nTPM
HPA Brain:36.9 nTPM
GTEx:47.3 nTPM
FANTOM5:72.0 Scaled Tags Per Million
Pig:7.8 nTPM
Mouse:1.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
2019 Male, age 18, unknown 50.2
1870 Female, age 42, unknown 23.4
2828 Female, age 72, unknown 21.5
2586 Male, age 75, left hemisphere 20.7
2666 Male, age 74, left hemisphere 18.5
1830 Male, age 51, unknown 18.3
2411 Female, age 72, unknown 16.1
1827 Male, age 72, unknown 16.0
1833 Male, age 53, unknown 14.1
2219 Male, age 76, both hemispheres 13.4
Dorsal raphe nucleus
nTPM: 16.8
2016 Female, age 72, unknown 20.8
1828 Male, age 53, unknown 19.1
2750 Male, age 76, both hemispheres 17.5
2298 Female, age 72, unknown 14.4
2047 Male, age 72, unknown 12.4
Inferior colliculus
nTPM: 19.1
2097 Female, age 72, unknown 27.7
1890 Male, age 53, unknown 18.9
1848 Female, age 42, unknown 16.0
2849 Male, age 72, unknown 14.0
Median raphe nucleus
nTPM: 18.9
2220 Male, age 76, midline 18.9
Periaquaductal grey, anterior
nTPM: 20.4
2502 Female, age 75, unknown 26.7
1795 Male, age 51, unknown 25.7
1947 Male, age 18, unknown 8.9
Periaquaductal grey, dorsal
nTPM: 23.0
1831 Male, age 72, unknown 34.3
2850 Male, age 76, both hemispheres 23.6
2464 Female, age 72, unknown 17.3
1840 Male, age 53, unknown 16.8
Periaquaductal grey, lateral
nTPM: 25.6
2053 Male, age 18, unknown 26.2
2272 Male, age 74, both hemispheres 26.1
2140 Male, age 76, both hemispheres 24.6
Pretectal area
nTPM: 36.9
1817 Female, age 42, unknown 67.0
1815 Male, age 53, unknown 61.8
2007 Male, age 72, unknown 60.5
1944 Female, age 72, unknown 36.3
2273 Male, age 74, both hemispheres 34.3
2224 Female, age 72, unknown 28.9
2316 Male, age 76, right hemisphere 26.8
2667 Female, age 75, unknown 26.6
1816 Male, age 51, unknown 23.7
2407 Male, age 75, both hemispheres 21.9
2825 Male, age 18, unknown 18.5
Red nucleus
nTPM: 24.2
2785 Male, age 18, unknown 48.9
2503 Female, age 72, unknown 26.4
2823 Male, age 76, right hemisphere 25.7
1865 Male, age 51, unknown 25.3
1821 Female, age 72, unknown 24.0
1904 Male, age 53, unknown 22.6
1954 Female, age 42, unknown 21.2
2588 Male, age 74, left hemisphere 19.8
2725 Female, age 75, unknown 19.8
2769 Male, age 72, unknown 19.6
2227 Male, age 72, unknown 19.4
2584 Male, age 75, left hemisphere 17.8
Substantia nigra
nTPM: 21.0
1889 Female, age 72, unknown 33.8
2665 Male, age 74, both hemispheres 28.6
1851 Male, age 51, unknown 27.5
2409 Female, age 72, unknown 22.4
2590 Female, age 75, unknown 19.7
2241 Male, age 72, unknown 17.4
2699 Male, age 18, unknown 16.2
1916 Female, age 42, unknown 15.3
2583 Male, age 75, right hemisphere 15.0
1941 Male, age 53, unknown 13.7
Superior colliculus
nTPM: 27.0
2087 Female, age 72, unknown 35.1
1913 Female, age 42, unknown 34.4
1995 Male, age 72, unknown 32.9
1796 Male, age 53, unknown 28.0
2668 Female, age 75, unknown 27.7
2587 Male, age 74, left hemisphere 26.6
1839 Male, age 51, unknown 23.3
2664 Male, age 75, both hemispheres 22.7
2261 Male, age 18, unknown 21.5
1895 Male, age 76, right hemisphere 17.5
Ventral tegmental area
nTPM: 21.1
2021 Male, age 53, unknown 24.8
1915 Female, age 42, unknown 23.4
2410 Female, age 72, unknown 21.3
2218 Male, age 76, both hemispheres 19.8
2223 Female, age 72, unknown 19.6
1942 Male, age 51, unknown 17.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.3
Samples: 139

Max nTPM: 148.7
Min nTPM: 5.8
Std nTPM: 27.0
Median nTPM: 40.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 148.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 143.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 127.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 123.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 122.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 111.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 105.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 100.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 94.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 92.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 91.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 72.0
FF:10158-103A5 76 years, female 72.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.5
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.1
Sample A Female 6.6
Sample B Female 10.7
Sample C Male 6.6
Sample D Male 6.1
Midbrain
nTPM: 5.5
Samples: 4

Max nTPM: 10.1
Min nTPM: 3.6
Sample A Female 10.1
Sample B Female 4.6
Sample C Male 3.6
Sample D Male 3.7
Periaqueductal gray
nTPM: 4.6
Samples: 3

Max nTPM: 5.2
Min nTPM: 4.1
Sample B Female 4.6
Sample C Male 4.1
Sample D Male 5.2
Superior colliculi
nTPM: 7.8
Samples: 4

Max nTPM: 19.5
Min nTPM: 3.4
Sample A Female 4.1
Sample B Female 19.5
Sample C Male 4.0
Sample D Male 3.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.8
Samples: 4

Max nTPM: 3.9
Min nTPM: 0.6
Sample A Male 0.7
Sample B Male 0.6
Sample C Female 2.1
Sample D Female 3.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70295488 Antisense, RP_050531_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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