MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.0 nTPM
HPA Brain:169.4 nTPM
GTEx:42.0 nTPM
FANTOM5:48.5 Scaled Tags Per Million
Pig:113.6 nTPM
Mouse:186.9 nTPM
Allen mouse:10.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 169.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.8
2219 Male, age 76, both hemispheres 180.0
2666 Male, age 74, left hemisphere 163.9
1827 Male, age 72, unknown 162.3
2828 Female, age 72, unknown 136.5
2586 Male, age 75, left hemisphere 130.0
2019 Male, age 18, unknown 128.0
1870 Female, age 42, unknown 116.2
1833 Male, age 53, unknown 115.2
1830 Male, age 51, unknown 101.0
2411 Female, age 72, unknown 95.1
Dorsal raphe nucleus
nTPM: 109.8
2298 Female, age 72, unknown 126.0
1828 Male, age 53, unknown 114.9
2047 Male, age 72, unknown 110.7
2750 Male, age 76, both hemispheres 108.3
2016 Female, age 72, unknown 89.2
Inferior colliculus
nTPM: 141.6
2849 Male, age 72, unknown 184.9
1848 Female, age 42, unknown 137.9
2097 Female, age 72, unknown 126.9
1890 Male, age 53, unknown 116.7
Median raphe nucleus
nTPM: 169.4
2220 Male, age 76, midline 169.4
Periaquaductal grey, anterior
nTPM: 157.8
1795 Male, age 51, unknown 173.3
2502 Female, age 75, unknown 153.1
1947 Male, age 18, unknown 147.0
Periaquaductal grey, dorsal
nTPM: 137.2
1831 Male, age 72, unknown 140.8
1840 Male, age 53, unknown 140.2
2850 Male, age 76, both hemispheres 139.4
2464 Female, age 72, unknown 128.4
Periaquaductal grey, lateral
nTPM: 121.4
2140 Male, age 76, both hemispheres 127.0
2272 Male, age 74, both hemispheres 121.7
2053 Male, age 18, unknown 115.6
Pretectal area
nTPM: 160.5
1816 Male, age 51, unknown 226.4
1817 Female, age 42, unknown 210.0
1944 Female, age 72, unknown 185.1
2007 Male, age 72, unknown 180.4
2667 Female, age 75, unknown 172.3
1815 Male, age 53, unknown 163.8
2825 Male, age 18, unknown 141.9
2224 Female, age 72, unknown 137.8
2316 Male, age 76, right hemisphere 118.5
2407 Male, age 75, both hemispheres 118.5
2273 Male, age 74, both hemispheres 111.2
Red nucleus
nTPM: 90.3
2785 Male, age 18, unknown 121.2
2584 Male, age 75, left hemisphere 113.0
2725 Female, age 75, unknown 108.7
2588 Male, age 74, left hemisphere 107.7
1821 Female, age 72, unknown 86.9
2823 Male, age 76, right hemisphere 84.8
2227 Male, age 72, unknown 84.6
2769 Male, age 72, unknown 83.8
1954 Female, age 42, unknown 83.6
2503 Female, age 72, unknown 72.3
1904 Male, age 53, unknown 69.8
1865 Male, age 51, unknown 67.5
Substantia nigra
nTPM: 107.8
2665 Male, age 74, both hemispheres 148.3
1889 Female, age 72, unknown 147.1
1941 Male, age 53, unknown 145.5
1916 Female, age 42, unknown 115.4
1851 Male, age 51, unknown 96.0
2583 Male, age 75, right hemisphere 94.3
2590 Female, age 75, unknown 87.5
2241 Male, age 72, unknown 84.1
2409 Female, age 72, unknown 81.4
2699 Male, age 18, unknown 79.0
Superior colliculus
nTPM: 131.4
2087 Female, age 72, unknown 164.9
2261 Male, age 18, unknown 157.6
1895 Male, age 76, right hemisphere 148.8
2664 Male, age 75, both hemispheres 144.7
1796 Male, age 53, unknown 144.3
1839 Male, age 51, unknown 142.6
2668 Female, age 75, unknown 117.4
1913 Female, age 42, unknown 108.1
2587 Male, age 74, left hemisphere 96.2
1995 Male, age 72, unknown 89.3
Ventral tegmental area
nTPM: 115.6
2218 Male, age 76, both hemispheres 141.9
2223 Female, age 72, unknown 124.0
1942 Male, age 51, unknown 119.5
2021 Male, age 53, unknown 111.8
1915 Female, age 42, unknown 107.5
2410 Female, age 72, unknown 88.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.0
Samples: 139

Max nTPM: 147.7
Min nTPM: 9.7
Std nTPM: 24.2
Median nTPM: 36.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 147.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 109.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 102.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 101.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 95.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 94.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 92.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 90.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 88.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 87.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 85.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.5
FF:10158-103A5 76 years, female 48.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 113.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.4
Samples: 4

Max nTPM: 110.0
Min nTPM: 36.1
Sample A Female 94.1
Sample B Female 57.2
Sample C Male 110.0
Sample D Male 36.1
Midbrain
nTPM: 108.4
Samples: 4

Max nTPM: 170.4
Min nTPM: 34.3
Sample A Female 34.3
Sample B Female 78.3
Sample C Male 170.4
Sample D Male 150.6
Periaqueductal gray
nTPM: 82.7
Samples: 3

Max nTPM: 102.9
Min nTPM: 69.1
Sample B Female 76.0
Sample C Male 102.9
Sample D Male 69.1
Superior colliculi
nTPM: 113.6
Samples: 4

Max nTPM: 128.3
Min nTPM: 88.0
Sample A Female 115.2
Sample B Female 88.0
Sample C Male 128.3
Sample D Male 122.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 186.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 186.9
Samples: 4

Max nTPM: 204.6
Min nTPM: 169.3
Sample A Male 204.6
Sample B Male 169.3
Sample C Female 188.0
Sample D Female 185.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
68193007 Antisense, RP_040922_01_D12, Mouse strain C57BL/6J (56 days, male) 16.2
72109445 Antisense, RP_050712_04_G07, Mouse strain C57BL/6J (56 days, male) 9.5
72182975 Antisense, RP_050719_03_A03, Mouse strain C57BL/6J (56 days, male) 5.5
70918916 Antisense, RP_050712_04_G07, Mouse strain C57BL/6J (56 days, male) 5.3

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