MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.9 nTPM
HPA Brain:62.8 nTPM
GTEx:20.9 nTPM
FANTOM5:64.6 Scaled Tags Per Million
Pig:0.3 nTPM
Mouse:0.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
1830 Male, age 51, unknown 66.7
1833 Male, age 53, unknown 58.0
2666 Male, age 74, left hemisphere 57.2
2411 Female, age 72, unknown 56.6
2586 Male, age 75, left hemisphere 48.9
2019 Male, age 18, unknown 47.6
2219 Male, age 76, both hemispheres 47.1
2828 Female, age 72, unknown 44.0
1870 Female, age 42, unknown 42.3
1827 Male, age 72, unknown 39.2
Dorsal raphe nucleus
nTPM: 41.7
2750 Male, age 76, both hemispheres 65.1
2016 Female, age 72, unknown 46.1
1828 Male, age 53, unknown 37.5
2298 Female, age 72, unknown 31.9
2047 Male, age 72, unknown 28.0
Inferior colliculus
nTPM: 32.7
2849 Male, age 72, unknown 38.6
1848 Female, age 42, unknown 33.0
2097 Female, age 72, unknown 31.3
1890 Male, age 53, unknown 28.0
Median raphe nucleus
nTPM: 38.3
2220 Male, age 76, midline 38.3
Periaquaductal grey, anterior
nTPM: 42.0
2502 Female, age 75, unknown 48.5
1947 Male, age 18, unknown 41.8
1795 Male, age 51, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 40.4
2464 Female, age 72, unknown 51.4
2850 Male, age 76, both hemispheres 39.3
1831 Male, age 72, unknown 36.0
1840 Male, age 53, unknown 34.8
Periaquaductal grey, lateral
nTPM: 46.1
2272 Male, age 74, both hemispheres 55.6
2053 Male, age 18, unknown 41.4
2140 Male, age 76, both hemispheres 41.4
Pretectal area
nTPM: 38.0
2316 Male, age 76, right hemisphere 63.5
2273 Male, age 74, both hemispheres 48.0
2825 Male, age 18, unknown 48.0
2407 Male, age 75, both hemispheres 47.0
1815 Male, age 53, unknown 44.1
2224 Female, age 72, unknown 40.4
2667 Female, age 75, unknown 29.7
2007 Male, age 72, unknown 28.1
1944 Female, age 72, unknown 25.1
1817 Female, age 42, unknown 23.9
1816 Male, age 51, unknown 20.0
Red nucleus
nTPM: 62.8
2823 Male, age 76, right hemisphere 84.4
1865 Male, age 51, unknown 74.8
2785 Male, age 18, unknown 66.4
2769 Male, age 72, unknown 66.1
2503 Female, age 72, unknown 65.5
2725 Female, age 75, unknown 65.1
2227 Male, age 72, unknown 64.8
1904 Male, age 53, unknown 63.1
2588 Male, age 74, left hemisphere 62.1
2584 Male, age 75, left hemisphere 59.4
1821 Female, age 72, unknown 45.8
1954 Female, age 42, unknown 36.6
Substantia nigra
nTPM: 42.1
2583 Male, age 75, right hemisphere 64.6
2590 Female, age 75, unknown 57.3
2699 Male, age 18, unknown 45.6
1851 Male, age 51, unknown 45.2
1941 Male, age 53, unknown 41.8
2241 Male, age 72, unknown 41.7
2409 Female, age 72, unknown 37.7
2665 Male, age 74, both hemispheres 33.6
1889 Female, age 72, unknown 30.7
1916 Female, age 42, unknown 23.2
Superior colliculus
nTPM: 46.2
1995 Male, age 72, unknown 81.6
1913 Female, age 42, unknown 58.1
1895 Male, age 76, right hemisphere 54.6
2587 Male, age 74, left hemisphere 53.1
1839 Male, age 51, unknown 49.6
1796 Male, age 53, unknown 38.3
2664 Male, age 75, both hemispheres 33.6
2087 Female, age 72, unknown 31.4
2261 Male, age 18, unknown 31.3
2668 Female, age 75, unknown 30.3
Ventral tegmental area
nTPM: 43.8
2223 Female, age 72, unknown 49.9
2410 Female, age 72, unknown 48.2
2021 Male, age 53, unknown 46.9
1942 Male, age 51, unknown 44.2
2218 Male, age 76, both hemispheres 40.5
1915 Female, age 42, unknown 33.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.9
Samples: 139

Max nTPM: 98.7
Min nTPM: 3.2
Std nTPM: 13.7
Median nTPM: 17.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 98.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 63.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 59.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 58.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 57.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 52.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 49.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 48.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 46.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.6
FF:10158-103A5 76 years, female 64.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.1
Periaqueductal gray
nTPM: 0.1
Samples: 3

Max nTPM: 0.1
Min nTPM: 0.1
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.1
Superior colliculi
nTPM: 0.3
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.9
Sample C Male 0.0
Sample D Male 0.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.0
Sample A Male 0.3
Sample B Male 0.6
Sample C Female 0.1
Sample D Female 0.0

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