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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
373.2
nTPM
GTEx:
373.2
nTPM
FANTOM5:
136.2
Scaled Tags Per Million
Pig:
164.3
nTPM
Mouse:
1886.7
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA054148
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA059929
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Medium
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
373.2
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 373.2
Samples: 105
Max nTPM: 830.0
Min nTPM: 127.9
Std nTPM: 122.1
Median nTPM: 0.0
218_1
71 years, female
830.0
322_1
76 years, male
684.2
447_1
81 years, male
596.4
350_1
84 years, female
574.3
316_1
62 years, male
572.1
237_1
82 years, male
568.6
319_1
81 years, male
541.1
379_1
60 years, male
537.6
321_1
62 years, female
537.5
6_1
73 years, female
532.0
377_1
82 years, female
530.0
335_1
73 years, female
524.9
376_1
75 years, female
517.7
163_1
78 years, male
513.9
354_1
81 years, female
503.1
352_1
62 years, male
499.5
452_1
88 years, female
494.6
172_1
72 years, female
488.9
349_1
83 years, male
485.5
2_1
77 years, female
479.1
375_1
74 years, female
476.8
295_1
61 years, female
470.9
286_1
68 years, female
461.1
405_1
91 years, male
456.2
293_1
68 years, female
454.0
348_1
84 years, male
453.9
480_1
63 years, male
453.4
503_1
68 years, male
449.2
307_1
66 years, female
446.0
243_1
75 years, male
440.2
318_1
68 years, male
439.9
355_1
70 years, female
432.4
351_1
91 years, male
428.0
189_1
76 years, male
420.7
386_1
76 years, male
420.4
425_1
59 years, female
419.0
404_1
82 years, female
418.4
394_1
75 years, female
418.0
153_1
70 years, female
417.5
356_1
87 years, female
417.2
229_1
69 years, female
414.9
389_1
86 years, female
411.8
495_1
57 years, female
409.9
406_1
79 years, male
403.3
353_1
82 years, female
389.0
320_1
89 years, female
388.1
292_1
71 years, male
375.8
251_1
78 years, male
373.6
142_1
61 years, female
372.5
173_1
67 years, male
370.3
384_1
83 years, male
367.2
265_1
87 years, male
367.0
145_1
84 years, male
362.6
499_1
55 years, female
359.8
126_1
63 years, male
358.7
526_1
61 years, male
357.3
43_1
64 years, female
356.6
266_1
85 years, male
355.3
177_1
74 years, male
354.3
246_1
77 years, male
354.1
264_1
73 years, female
344.9
291_1
76 years, male
344.7
217_1
76 years, male
340.4
4_1
88 years, female
339.4
518_1
75 years, female
338.6
517_1
88 years, male
335.4
324_1
76 years, male
330.9
35_1
74 years, female
328.6
396_1
62 years, male
323.2
317_1
60 years, male
320.9
468_1
89 years, male
320.2
115_1
83 years, male
317.9
347_1
72 years, male
313.4
506_1
65 years, male
306.2
162_1
79 years, female
305.5
137_1
83 years, male
297.9
81_1
67 years, male
296.5
9_1
66 years, female
294.4
466_1
57 years, female
288.8
311_1
78 years, male
286.4
254_1
77 years, female
280.5
17_1
71 years, male
271.7
18_1
88 years, male
269.7
313_1
79 years, female
269.2
288_1
66 years, female
268.4
117_1
61 years, male
266.3
314_1
67 years, male
263.1
308_1
70 years, female
259.9
32_1
67 years, male
257.7
41_1
94 years, female
243.6
42_1
85 years, male
238.6
120_1
70 years, female
238.5
109_1
81 years, female
235.5
139_1
64 years, female
232.3
415_1
77 years, female
222.5
99_1
64 years, male
217.7
315_1
62 years, female
196.5
414_1
84 years, female
190.1
149_1
88 years, male
186.3
119_1
70 years, female
169.1
501_1
88 years, male
167.2
490_1
67 years, female
158.5
89_1
63 years, male
137.5
413_1
59 years, female
133.1
491_1
89 years, female
127.9
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.