HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:18.4 nTPM
HPA Brain:21.4 nTPM
GTEx:18.4 nTPM
FANTOM5:37.2 Scaled Tags Per Million
Pig:22.1 nTPM
Mouse:89.1 nTPM
Allen mouse:6.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043172
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Hippocampus
nTPM: 18.4
1898 Male, age 80, left hemisphere 20.8
1855 Male, age 76, left hemisphere 19.4
2148 Female, age 91, left hemisphere 18.2
2621 Female, age 67, right hemisphere 18.1
1911 Female, age 85, right hemisphere 17.9
2529 Female, age 94, left hemisphere 15.7
Dentate gyrus
nTPM: 19.0
2010 Male, age 76, both hemispheres 22.8
2530 Female, age 94, left hemisphere 20.7
2246 Female, age 85, both hemispheres 19.9
1927 Female, age 91, both hemispheres 18.6
2528 Male, age 74, both hemispheres 17.3
2531 Female, age 67, both hemispheres 14.9
Entorhinal gyrus
nTPM: 16.4
1938 Female, age 85, left hemisphere 17.9
2613 Female, age 94, left hemisphere 17.5
1787 Male, age 76, left hemisphere 16.0
2764 Male, age 80, right hemisphere 16.0
2686 Male, age 75, right hemisphere 15.8
2117 Female, age 91, right hemisphere 15.3
Hippocampus, CA1
nTPM: 21.4
2749 Male, age 80, left hemisphere 27.5
2045 Male, age 76, both hemispheres 24.4
1873 Female, age 85, both hemispheres 21.9
2527 Male, age 74, both hemispheres 17.2
2082 Female, age 91, right hemisphere 15.9
Hippocampus, CA2
nTPM: 18.3
1963 Male, age 80, left hemisphere 21.2
1892 Male, age 76, both hemispheres 19.3
2249 Male, age 74, both hemispheres 18.7
1940 Female, age 85, left hemisphere 17.8
2437 Female, age 94, left hemisphere 16.9
2113 Female, age 91, right hemisphere 16.0
Hippocampus, CA3
nTPM: 18.5
2137 Male, age 80, left hemisphere 21.2
2436 Male, age 74, both hemispheres 20.0
2620 Female, age 94, left hemisphere 18.6
1891 Female, age 85, both hemispheres 18.2
1867 Male, age 76, both hemispheres 17.3
2861 Female, age 67, both hemispheres 15.8
Parahippocampal cortex
nTPM: 16.1
1933 Female, age 85, both hemispheres 17.9
2250 Female, age 67, right hemisphere 16.9
2693 Female, age 94, both hemispheres 16.8
2532 Female, age 72, left hemisphere 16.6
2692 Male, age 74, both hemispheres 16.6
2245 Female, age 91, both hemispheres 16.1
1850 Male, age 80, both hemispheres 15.5
1990 Female, age 91, right hemisphere 15.4
2622 Female, age 67, right hemisphere 15.4
2018 Male, age 76, both hemispheres 13.8
Perirhinal gyrus
nTPM: 17.4
1841 Female, age 85, right hemisphere 19.0
2521 Female, age 94, right hemisphere 18.1
1847 Female, age 91, left hemisphere 17.7
1794 Male, age 80, right hemisphere 16.8
2848 Male, age 76, right hemisphere 15.5
Subiculum
nTPM: 16.2
1977 Female, age 85, both hemispheres 18.6
2042 Male, age 76, both hemispheres 17.0
2729 Female, age 91, right hemisphere 16.7
1901 Male, age 80, both hemispheres 15.7
2619 Male, age 74, both hemispheres 15.2
2438 Female, age 94, left hemisphere 14.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.4
Samples: 197

Max nTPM: 32.4
Min nTPM: 7.4
Std nTPM: 4.5
Median nTPM: 18.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 32.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 30.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 30.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 30.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 29.4
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 28.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 28.4
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 27.9
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 27.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 27.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 26.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.2
FF:10169-103B7 60 years, female 40.5
FF:10153-102I9 76 years, female 33.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 22.1
Pig sample Sample description nTPM
Subiculum
nTPM: 19.8
Samples: 4

Max nTPM: 20.9
Min nTPM: 18.2
Sample A Female 20.1
Sample B Female 19.8
Sample C Male 18.2
Sample D Male 20.9
Dorsal hippocampus
nTPM: 22.1
Samples: 4

Max nTPM: 25.2
Min nTPM: 20.9
Sample A Female 25.2
Sample B Female 21.3
Sample C Male 20.9
Sample D Male 21.1
Entorhinal cortex
nTPM: 20.6
Samples: 4

Max nTPM: 22.4
Min nTPM: 18.7
Sample A Female 20.9
Sample B Female 18.7
Sample C Male 20.2
Sample D Male 22.4
Ventral hippocampus
nTPM: 21.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.8
Sample A Female 22.2
Sample B Female 17.8
Sample C Male 21.1
Sample D Male 23.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 89.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 79.1
Samples: 4

Max nTPM: 89.2
Min nTPM: 72.7
Sample A Male 72.7
Sample B Male 73.9
Sample C Female 89.2
Sample D Female 80.7
Hippocampal formation
nTPM: 89.1
Samples: 4

Max nTPM: 98.2
Min nTPM: 81.2
Sample A Male 98.2
Sample B Male 86.2
Sample C Female 90.9
Sample D Female 81.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.0
413781 Antisense, RP_040809_01_D01, Mouse strain C57BL/6J (56 days, male) 8.4
70927828 Antisense, RP_050725_01_B04, Mouse strain C57BL/6J (56 days, male) 3.6

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