MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.4 nTPM
HPA Brain:22.8 nTPM
GTEx:16.4 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:84.8 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.6
1827 Male, age 72, unknown 23.7
2019 Male, age 18, unknown 23.2
2586 Male, age 75, left hemisphere 22.6
2828 Female, age 72, unknown 21.2
1830 Male, age 51, unknown 21.0
2411 Female, age 72, unknown 20.4
1870 Female, age 42, unknown 20.3
1833 Male, age 53, unknown 19.5
2666 Male, age 74, left hemisphere 17.3
2219 Male, age 76, both hemispheres 16.2
Dorsal raphe nucleus
nTPM: 19.4
2298 Female, age 72, unknown 21.0
2750 Male, age 76, both hemispheres 20.2
2047 Male, age 72, unknown 19.7
1828 Male, age 53, unknown 18.7
2016 Female, age 72, unknown 17.6
Inferior colliculus
nTPM: 19.3
2097 Female, age 72, unknown 20.2
1848 Female, age 42, unknown 19.7
2849 Male, age 72, unknown 19.1
1890 Male, age 53, unknown 18.1
Median raphe nucleus
nTPM: 20.5
2220 Male, age 76, midline 20.5
Periaquaductal grey, anterior
nTPM: 20.6
1947 Male, age 18, unknown 21.5
2502 Female, age 75, unknown 20.7
1795 Male, age 51, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 19.3
2850 Male, age 76, both hemispheres 20.5
1840 Male, age 53, unknown 20.0
1831 Male, age 72, unknown 19.0
2464 Female, age 72, unknown 17.6
Periaquaductal grey, lateral
nTPM: 19.9
2140 Male, age 76, both hemispheres 20.7
2053 Male, age 18, unknown 19.8
2272 Male, age 74, both hemispheres 19.2
Pretectal area
nTPM: 22.8
1816 Male, age 51, unknown 28.0
1817 Female, age 42, unknown 27.3
1944 Female, age 72, unknown 27.0
2007 Male, age 72, unknown 25.0
1815 Male, age 53, unknown 24.2
2667 Female, age 75, unknown 22.9
2825 Male, age 18, unknown 20.9
2273 Male, age 74, both hemispheres 20.4
2224 Female, age 72, unknown 19.8
2407 Male, age 75, both hemispheres 18.7
2316 Male, age 76, right hemisphere 17.0
Red nucleus
nTPM: 18.8
2588 Male, age 74, left hemisphere 21.4
2785 Male, age 18, unknown 20.0
2823 Male, age 76, right hemisphere 19.5
1865 Male, age 51, unknown 19.3
1904 Male, age 53, unknown 19.2
1821 Female, age 72, unknown 18.9
1954 Female, age 42, unknown 18.8
2503 Female, age 72, unknown 18.8
2725 Female, age 75, unknown 18.0
2584 Male, age 75, left hemisphere 17.6
2769 Male, age 72, unknown 17.5
2227 Male, age 72, unknown 16.5
Substantia nigra
nTPM: 17.3
1889 Female, age 72, unknown 22.7
2583 Male, age 75, right hemisphere 19.2
1941 Male, age 53, unknown 18.4
2665 Male, age 74, both hemispheres 17.8
1916 Female, age 42, unknown 16.9
2409 Female, age 72, unknown 16.9
2590 Female, age 75, unknown 16.9
2241 Male, age 72, unknown 15.9
1851 Male, age 51, unknown 15.1
2699 Male, age 18, unknown 12.8
Superior colliculus
nTPM: 21.2
2261 Male, age 18, unknown 23.9
2664 Male, age 75, both hemispheres 23.3
2087 Female, age 72, unknown 23.1
1913 Female, age 42, unknown 21.8
2668 Female, age 75, unknown 21.8
1995 Male, age 72, unknown 21.6
1796 Male, age 53, unknown 19.8
2587 Male, age 74, left hemisphere 19.6
1839 Male, age 51, unknown 19.5
1895 Male, age 76, right hemisphere 18.0
Ventral tegmental area
nTPM: 18.8
2223 Female, age 72, unknown 22.6
2021 Male, age 53, unknown 18.8
2410 Female, age 72, unknown 18.6
1942 Male, age 51, unknown 18.4
2218 Male, age 76, both hemispheres 18.0
1915 Female, age 42, unknown 16.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.4
Samples: 139

Max nTPM: 29.4
Min nTPM: 9.0
Std nTPM: 3.5
Median nTPM: 16.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 29.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 28.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 24.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 23.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 22.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 22.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 22.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 21.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 21.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.8
FF:10158-103A5 76 years, female 34.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.8
Samples: 4

Max nTPM: 33.0
Min nTPM: 20.2
Sample A Female 29.7
Sample B Female 20.2
Sample C Male 24.3
Sample D Male 33.0
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 70.9
Min nTPM: 22.7
Sample A Female 70.9
Sample B Female 24.1
Sample C Male 37.1
Sample D Male 22.7
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 23.3
Min nTPM: 22.8
Sample B Female 22.8
Sample C Male 23.1
Sample D Male 23.3
Superior colliculi
nTPM: 28.8
Samples: 4

Max nTPM: 30.8
Min nTPM: 26.3
Sample A Female 27.3
Sample B Female 26.3
Sample C Male 30.8
Sample D Male 30.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 84.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 84.8
Samples: 4

Max nTPM: 90.0
Min nTPM: 79.5
Sample A Male 90.0
Sample B Male 79.5
Sample C Female 86.5
Sample D Female 83.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
70927828 Antisense, RP_050725_01_B04, Mouse strain C57BL/6J (56 days, male) 1.9
413781 Antisense, RP_040809_01_D01, Mouse strain C57BL/6J (56 days, male) 1.8

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