MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:55.5 nTPM
GTEx:14.1 nTPM
FANTOM5:13.9 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:9.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.6
2019 Male, age 18, unknown 58.1
2411 Female, age 72, unknown 56.1
2828 Female, age 72, unknown 55.5
1830 Male, age 51, unknown 54.1
2219 Male, age 76, both hemispheres 54.1
1827 Male, age 72, unknown 52.6
1833 Male, age 53, unknown 50.6
2666 Male, age 74, left hemisphere 48.1
1870 Female, age 42, unknown 46.8
2586 Male, age 75, left hemisphere 39.7
Dorsal raphe nucleus
nTPM: 47.0
2750 Male, age 76, both hemispheres 52.9
2016 Female, age 72, unknown 47.6
1828 Male, age 53, unknown 46.3
2047 Male, age 72, unknown 45.5
2298 Female, age 72, unknown 42.5
Inferior colliculus
nTPM: 48.6
1890 Male, age 53, unknown 52.9
2097 Female, age 72, unknown 48.9
2849 Male, age 72, unknown 46.4
1848 Female, age 42, unknown 46.1
Median raphe nucleus
nTPM: 44.1
2220 Male, age 76, midline 44.1
Periaquaductal grey, anterior
nTPM: 49.7
1795 Male, age 51, unknown 52.4
1947 Male, age 18, unknown 50.4
2502 Female, age 75, unknown 46.3
Periaquaductal grey, dorsal
nTPM: 52.6
1831 Male, age 72, unknown 55.7
2850 Male, age 76, both hemispheres 55.0
2464 Female, age 72, unknown 52.0
1840 Male, age 53, unknown 47.9
Periaquaductal grey, lateral
nTPM: 51.6
2140 Male, age 76, both hemispheres 54.3
2053 Male, age 18, unknown 51.9
2272 Male, age 74, both hemispheres 48.7
Pretectal area
nTPM: 55.5
1944 Female, age 72, unknown 72.6
2667 Female, age 75, unknown 62.1
1816 Male, age 51, unknown 59.0
2316 Male, age 76, right hemisphere 57.5
1815 Male, age 53, unknown 55.4
2407 Male, age 75, both hemispheres 55.0
2273 Male, age 74, both hemispheres 52.1
2007 Male, age 72, unknown 51.9
2825 Male, age 18, unknown 50.5
1817 Female, age 42, unknown 49.1
2224 Female, age 72, unknown 45.8
Red nucleus
nTPM: 50.4
2823 Male, age 76, right hemisphere 57.3
2584 Male, age 75, left hemisphere 52.9
1954 Female, age 42, unknown 52.2
1865 Male, age 51, unknown 51.5
1904 Male, age 53, unknown 51.0
2588 Male, age 74, left hemisphere 51.0
2227 Male, age 72, unknown 50.9
2503 Female, age 72, unknown 50.4
2785 Male, age 18, unknown 47.8
2769 Male, age 72, unknown 47.1
2725 Female, age 75, unknown 47.0
1821 Female, age 72, unknown 45.5
Substantia nigra
nTPM: 50.4
2409 Female, age 72, unknown 64.0
2590 Female, age 75, unknown 54.2
2583 Male, age 75, right hemisphere 53.9
1941 Male, age 53, unknown 52.3
2241 Male, age 72, unknown 52.0
1889 Female, age 72, unknown 50.2
2699 Male, age 18, unknown 45.8
1851 Male, age 51, unknown 45.2
2665 Male, age 74, both hemispheres 45.1
1916 Female, age 42, unknown 41.2
Superior colliculus
nTPM: 53.2
2087 Female, age 72, unknown 63.5
2261 Male, age 18, unknown 57.6
1995 Male, age 72, unknown 56.6
1895 Male, age 76, right hemisphere 54.2
1913 Female, age 42, unknown 53.0
1796 Male, age 53, unknown 51.3
2664 Male, age 75, both hemispheres 50.4
2668 Female, age 75, unknown 49.9
1839 Male, age 51, unknown 48.1
2587 Male, age 74, left hemisphere 47.7
Ventral tegmental area
nTPM: 49.5
2410 Female, age 72, unknown 55.2
2223 Female, age 72, unknown 52.0
2021 Male, age 53, unknown 49.4
1942 Male, age 51, unknown 49.3
2218 Male, age 76, both hemispheres 48.7
1915 Female, age 42, unknown 42.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 29.3
Min nTPM: 7.4
Std nTPM: 3.2
Median nTPM: 13.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 29.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 24.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 23.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 21.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 20.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 19.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 19.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 19.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 18.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 18.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.9
FF:10158-103A5 76 years, female 13.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.3
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.7
Sample A Female 12.4
Sample B Female 9.4
Sample C Male 8.7
Sample D Male 10.5
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 12.4
Min nTPM: 9.1
Sample A Female 10.6
Sample B Female 10.8
Sample C Male 9.1
Sample D Male 12.4
Periaqueductal gray
nTPM: 9.5
Samples: 3

Max nTPM: 11.4
Min nTPM: 8.4
Sample B Female 8.7
Sample C Male 8.4
Sample D Male 11.4
Superior colliculi
nTPM: 10.1
Samples: 4

Max nTPM: 11.2
Min nTPM: 9.2
Sample A Female 10.0
Sample B Female 9.2
Sample C Male 9.9
Sample D Male 11.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 9.6
Min nTPM: 8.2
Sample A Male 9.6
Sample B Male 9.6
Sample C Female 8.2
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
67978661 Antisense, RP_040923_01_E02, Mouse strain C57BL/6J (56 days, male) 0.0

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