MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.7 nTPM
HPA Brain:25.1 nTPM
GTEx:23.7 nTPM
FANTOM5:63.2 Scaled Tags Per Million
Pig:72.2 nTPM
Mouse:97.8 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.3
2411 Female, age 72, unknown 26.7
2019 Male, age 18, unknown 24.8
1827 Male, age 72, unknown 20.6
1870 Female, age 42, unknown 20.4
2666 Male, age 74, left hemisphere 17.8
1830 Male, age 51, unknown 17.2
2219 Male, age 76, both hemispheres 17.2
2586 Male, age 75, left hemisphere 17.0
2828 Female, age 72, unknown 16.2
1833 Male, age 53, unknown 15.4
Dorsal raphe nucleus
nTPM: 20.9
2298 Female, age 72, unknown 26.2
1828 Male, age 53, unknown 21.7
2750 Male, age 76, both hemispheres 21.7
2047 Male, age 72, unknown 20.3
2016 Female, age 72, unknown 14.5
Inferior colliculus
nTPM: 17.8
2097 Female, age 72, unknown 21.8
1848 Female, age 42, unknown 18.9
1890 Male, age 53, unknown 16.2
2849 Male, age 72, unknown 14.2
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 20.8
1795 Male, age 51, unknown 17.5
Periaquaductal grey, dorsal
nTPM: 14.5
1840 Male, age 53, unknown 18.9
2464 Female, age 72, unknown 13.4
2850 Male, age 76, both hemispheres 13.0
1831 Male, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 14.6
2272 Male, age 74, both hemispheres 18.1
2053 Male, age 18, unknown 14.9
2140 Male, age 76, both hemispheres 10.8
Pretectal area
nTPM: 19.3
2007 Male, age 72, unknown 25.7
1817 Female, age 42, unknown 23.8
1816 Male, age 51, unknown 22.6
1944 Female, age 72, unknown 21.2
2273 Male, age 74, both hemispheres 19.3
2407 Male, age 75, both hemispheres 18.5
2667 Female, age 75, unknown 17.9
2224 Female, age 72, unknown 17.6
1815 Male, age 53, unknown 17.4
2825 Male, age 18, unknown 15.5
2316 Male, age 76, right hemisphere 12.4
Red nucleus
nTPM: 18.3
1821 Female, age 72, unknown 28.1
2725 Female, age 75, unknown 21.6
2584 Male, age 75, left hemisphere 19.8
2769 Male, age 72, unknown 18.9
2227 Male, age 72, unknown 18.8
2785 Male, age 18, unknown 18.8
1904 Male, age 53, unknown 17.0
1954 Female, age 42, unknown 16.4
1865 Male, age 51, unknown 15.9
2588 Male, age 74, left hemisphere 15.2
2503 Female, age 72, unknown 14.8
2823 Male, age 76, right hemisphere 13.9
Substantia nigra
nTPM: 25.1
1941 Male, age 53, unknown 36.4
1916 Female, age 42, unknown 35.1
2241 Male, age 72, unknown 33.1
1851 Male, age 51, unknown 28.7
1889 Female, age 72, unknown 25.4
2409 Female, age 72, unknown 22.9
2699 Male, age 18, unknown 19.7
2583 Male, age 75, right hemisphere 18.9
2665 Male, age 74, both hemispheres 17.4
2590 Female, age 75, unknown 13.7
Superior colliculus
nTPM: 17.2
2668 Female, age 75, unknown 21.6
2587 Male, age 74, left hemisphere 20.2
1839 Male, age 51, unknown 18.6
1895 Male, age 76, right hemisphere 18.3
2261 Male, age 18, unknown 17.8
2087 Female, age 72, unknown 17.6
1796 Male, age 53, unknown 16.8
2664 Male, age 75, both hemispheres 16.3
1913 Female, age 42, unknown 14.0
1995 Male, age 72, unknown 10.6
Ventral tegmental area
nTPM: 22.3
2410 Female, age 72, unknown 28.9
1915 Female, age 42, unknown 24.0
2218 Male, age 76, both hemispheres 22.6
2223 Female, age 72, unknown 21.7
1942 Male, age 51, unknown 20.8
2021 Male, age 53, unknown 15.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.7
Samples: 139

Max nTPM: 83.9
Min nTPM: 14.0
Std nTPM: 9.0
Median nTPM: 22.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 83.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 57.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 46.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 46.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 44.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 40.5
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 39.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 37.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 36.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 35.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.2
FF:10158-103A5 76 years, female 63.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.8
Samples: 4

Max nTPM: 77.1
Min nTPM: 31.3
Sample A Female 77.1
Sample B Female 40.5
Sample C Male 66.3
Sample D Male 31.3
Midbrain
nTPM: 64.4
Samples: 4

Max nTPM: 94.3
Min nTPM: 39.8
Sample A Female 39.8
Sample B Female 50.2
Sample C Male 94.3
Sample D Male 73.2
Periaqueductal gray
nTPM: 48.6
Samples: 3

Max nTPM: 59.6
Min nTPM: 41.9
Sample B Female 44.2
Sample C Male 59.6
Sample D Male 41.9
Superior colliculi
nTPM: 72.2
Samples: 4

Max nTPM: 89.1
Min nTPM: 50.0
Sample A Female 80.9
Sample B Female 50.0
Sample C Male 89.1
Sample D Male 68.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 97.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 97.8
Samples: 4

Max nTPM: 101.4
Min nTPM: 91.3
Sample A Male 91.3
Sample B Male 98.8
Sample C Female 101.4
Sample D Female 99.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74822941 Antisense, RP_060321_01_B02, Mouse strain C57BL/6J (56 days, male) 0.5

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