MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.0 nTPM
HPA Brain:46.7 nTPM
GTEx:30.0 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:73.0 nTPM
Mouse:92.5 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.0
2411 Female, age 72, unknown 44.4
1833 Male, age 53, unknown 44.1
2019 Male, age 18, unknown 43.8
1830 Male, age 51, unknown 43.5
1870 Female, age 42, unknown 41.7
1827 Male, age 72, unknown 39.3
2666 Male, age 74, left hemisphere 37.7
2219 Male, age 76, both hemispheres 36.4
2828 Female, age 72, unknown 30.3
2586 Male, age 75, left hemisphere 29.2
Dorsal raphe nucleus
nTPM: 39.2
2750 Male, age 76, both hemispheres 50.2
1828 Male, age 53, unknown 38.3
2016 Female, age 72, unknown 36.7
2298 Female, age 72, unknown 35.8
2047 Male, age 72, unknown 34.7
Inferior colliculus
nTPM: 40.1
2097 Female, age 72, unknown 43.7
2849 Male, age 72, unknown 40.2
1890 Male, age 53, unknown 39.0
1848 Female, age 42, unknown 37.4
Median raphe nucleus
nTPM: 46.7
2220 Male, age 76, midline 46.7
Periaquaductal grey, anterior
nTPM: 38.7
2502 Female, age 75, unknown 41.7
1947 Male, age 18, unknown 41.4
1795 Male, age 51, unknown 33.0
Periaquaductal grey, dorsal
nTPM: 37.3
2850 Male, age 76, both hemispheres 39.4
2464 Female, age 72, unknown 38.8
1831 Male, age 72, unknown 36.2
1840 Male, age 53, unknown 34.7
Periaquaductal grey, lateral
nTPM: 39.0
2272 Male, age 74, both hemispheres 45.0
2053 Male, age 18, unknown 36.5
2140 Male, age 76, both hemispheres 35.7
Pretectal area
nTPM: 39.7
2273 Male, age 74, both hemispheres 45.8
1817 Female, age 42, unknown 43.6
2007 Male, age 72, unknown 41.2
2224 Female, age 72, unknown 40.9
2316 Male, age 76, right hemisphere 39.7
1815 Male, age 53, unknown 39.3
1944 Female, age 72, unknown 39.2
1816 Male, age 51, unknown 39.0
2667 Female, age 75, unknown 37.2
2825 Male, age 18, unknown 37.0
2407 Male, age 75, both hemispheres 33.7
Red nucleus
nTPM: 40.6
1821 Female, age 72, unknown 45.6
2823 Male, age 76, right hemisphere 44.2
1954 Female, age 42, unknown 43.9
1904 Male, age 53, unknown 42.4
2503 Female, age 72, unknown 41.8
2769 Male, age 72, unknown 41.7
2785 Male, age 18, unknown 41.5
2227 Male, age 72, unknown 41.3
1865 Male, age 51, unknown 39.9
2725 Female, age 75, unknown 37.8
2584 Male, age 75, left hemisphere 36.0
2588 Male, age 74, left hemisphere 31.4
Substantia nigra
nTPM: 39.2
1941 Male, age 53, unknown 44.1
2409 Female, age 72, unknown 43.1
1916 Female, age 42, unknown 42.7
2241 Male, age 72, unknown 41.4
1889 Female, age 72, unknown 39.7
2583 Male, age 75, right hemisphere 39.2
1851 Male, age 51, unknown 37.0
2590 Female, age 75, unknown 36.3
2699 Male, age 18, unknown 35.6
2665 Male, age 74, both hemispheres 33.2
Superior colliculus
nTPM: 37.6
2668 Female, age 75, unknown 42.2
1913 Female, age 42, unknown 42.0
1839 Male, age 51, unknown 40.9
1895 Male, age 76, right hemisphere 39.7
2087 Female, age 72, unknown 37.9
2261 Male, age 18, unknown 37.3
2587 Male, age 74, left hemisphere 36.9
1995 Male, age 72, unknown 36.2
1796 Male, age 53, unknown 34.1
2664 Male, age 75, both hemispheres 28.8
Ventral tegmental area
nTPM: 40.9
2218 Male, age 76, both hemispheres 45.1
2223 Female, age 72, unknown 43.9
1942 Male, age 51, unknown 42.0
1915 Female, age 42, unknown 38.8
2410 Female, age 72, unknown 38.2
2021 Male, age 53, unknown 37.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.0
Samples: 139

Max nTPM: 47.5
Min nTPM: 20.2
Std nTPM: 5.6
Median nTPM: 28.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 47.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 45.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 42.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 42.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 41.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 40.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 40.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 39.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 38.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 38.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.4
FF:10158-103A5 76 years, female 23.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.0
Samples: 4

Max nTPM: 71.6
Min nTPM: 48.4
Sample A Female 71.6
Sample B Female 60.1
Sample C Male 59.9
Sample D Male 48.4
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 76.0
Min nTPM: 66.2
Sample A Female 66.2
Sample B Female 69.1
Sample C Male 73.1
Sample D Male 76.0
Periaqueductal gray
nTPM: 57.3
Samples: 3

Max nTPM: 58.2
Min nTPM: 56.7
Sample B Female 57.0
Sample C Male 58.2
Sample D Male 56.7
Superior colliculi
nTPM: 73.0
Samples: 4

Max nTPM: 80.8
Min nTPM: 60.3
Sample A Female 80.8
Sample B Female 60.3
Sample C Male 77.6
Sample D Male 73.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.5
Samples: 4

Max nTPM: 97.7
Min nTPM: 88.8
Sample A Male 97.7
Sample B Male 93.7
Sample C Female 89.7
Sample D Female 88.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68666738 Antisense, RP_050203_01_E05, Mouse strain C57BL/6J (56 days, male) 1.1

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