MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:212.9 nTPM
HPA Brain:255.1 nTPM
GTEx:212.9 nTPM
FANTOM5:317.0 Scaled Tags Per Million
Pig:146.7 nTPM
Mouse:154.3 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 255.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 221.4
2666 Male, age 74, left hemisphere 290.8
2586 Male, age 75, left hemisphere 247.9
2411 Female, age 72, unknown 234.4
1830 Male, age 51, unknown 226.7
2019 Male, age 18, unknown 224.5
1833 Male, age 53, unknown 214.7
1870 Female, age 42, unknown 213.9
2828 Female, age 72, unknown 205.6
1827 Male, age 72, unknown 187.9
2219 Male, age 76, both hemispheres 167.3
Dorsal raphe nucleus
nTPM: 189.3
2750 Male, age 76, both hemispheres 220.2
2016 Female, age 72, unknown 201.4
2047 Male, age 72, unknown 193.5
1828 Male, age 53, unknown 190.0
2298 Female, age 72, unknown 141.1
Inferior colliculus
nTPM: 157.1
1890 Male, age 53, unknown 175.6
1848 Female, age 42, unknown 161.3
2849 Male, age 72, unknown 152.6
2097 Female, age 72, unknown 139.0
Median raphe nucleus
nTPM: 168.7
2220 Male, age 76, midline 168.7
Periaquaductal grey, anterior
nTPM: 188.2
2502 Female, age 75, unknown 212.3
1947 Male, age 18, unknown 190.9
1795 Male, age 51, unknown 161.5
Periaquaductal grey, dorsal
nTPM: 157.8
2464 Female, age 72, unknown 178.6
1831 Male, age 72, unknown 167.8
2850 Male, age 76, both hemispheres 147.1
1840 Male, age 53, unknown 137.6
Periaquaductal grey, lateral
nTPM: 146.0
2053 Male, age 18, unknown 174.4
2272 Male, age 74, both hemispheres 132.6
2140 Male, age 76, both hemispheres 131.0
Pretectal area
nTPM: 171.7
1815 Male, age 53, unknown 220.1
2007 Male, age 72, unknown 201.3
2407 Male, age 75, both hemispheres 196.4
1817 Female, age 42, unknown 186.2
2316 Male, age 76, right hemisphere 184.6
1816 Male, age 51, unknown 167.7
2825 Male, age 18, unknown 165.5
1944 Female, age 72, unknown 162.1
2273 Male, age 74, both hemispheres 145.2
2224 Female, age 72, unknown 137.2
2667 Female, age 75, unknown 122.1
Red nucleus
nTPM: 255.1
2588 Male, age 74, left hemisphere 334.3
2503 Female, age 72, unknown 293.1
1904 Male, age 53, unknown 278.4
1865 Male, age 51, unknown 269.0
1821 Female, age 72, unknown 257.8
2725 Female, age 75, unknown 251.5
2769 Male, age 72, unknown 234.1
2823 Male, age 76, right hemisphere 233.6
1954 Female, age 42, unknown 231.0
2785 Male, age 18, unknown 230.9
2584 Male, age 75, left hemisphere 223.7
2227 Male, age 72, unknown 223.6
Substantia nigra
nTPM: 213.8
2409 Female, age 72, unknown 244.2
1851 Male, age 51, unknown 236.1
2665 Male, age 74, both hemispheres 217.6
2699 Male, age 18, unknown 216.3
2241 Male, age 72, unknown 213.3
2590 Female, age 75, unknown 212.4
2583 Male, age 75, right hemisphere 208.4
1916 Female, age 42, unknown 203.4
1889 Female, age 72, unknown 198.4
1941 Male, age 53, unknown 188.2
Superior colliculus
nTPM: 200.7
2668 Female, age 75, unknown 245.5
2587 Male, age 74, left hemisphere 239.4
1913 Female, age 42, unknown 222.6
1995 Male, age 72, unknown 221.7
2664 Male, age 75, both hemispheres 198.3
1839 Male, age 51, unknown 189.3
1895 Male, age 76, right hemisphere 180.0
2261 Male, age 18, unknown 174.5
1796 Male, age 53, unknown 174.2
2087 Female, age 72, unknown 161.9
Ventral tegmental area
nTPM: 190.5
2410 Female, age 72, unknown 214.9
2223 Female, age 72, unknown 196.1
1915 Female, age 42, unknown 193.7
1942 Male, age 51, unknown 191.6
2021 Male, age 53, unknown 175.8
2218 Male, age 76, both hemispheres 171.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 212.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 212.9
Samples: 139

Max nTPM: 515.6
Min nTPM: 87.4
Std nTPM: 95.9
Median nTPM: 197.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 515.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 512.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 485.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 469.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 446.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 443.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 425.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 415.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 390.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 383.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 362.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 317.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 317.0
FF:10158-103A5 76 years, female 317.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 146.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 140.1
Samples: 4

Max nTPM: 161.6
Min nTPM: 107.0
Sample A Female 149.2
Sample B Female 107.0
Sample C Male 142.5
Sample D Male 161.6
Midbrain
nTPM: 146.6
Samples: 4

Max nTPM: 193.1
Min nTPM: 111.8
Sample A Female 193.1
Sample B Female 143.5
Sample C Male 138.1
Sample D Male 111.8
Periaqueductal gray
nTPM: 111.6
Samples: 3

Max nTPM: 115.0
Min nTPM: 109.7
Sample B Female 115.0
Sample C Male 109.7
Sample D Male 110.1
Superior colliculi
nTPM: 121.6
Samples: 4

Max nTPM: 142.7
Min nTPM: 82.3
Sample A Female 126.7
Sample B Female 82.3
Sample C Male 142.7
Sample D Male 134.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 154.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 154.3
Samples: 4

Max nTPM: 160.7
Min nTPM: 146.4
Sample A Male 146.4
Sample B Male 155.7
Sample C Female 160.7
Sample D Female 154.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
69627027 Antisense, RP_050428_01_G03, Mouse strain C57BL/6J (56 days, male) 6.9

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