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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Ventrolateral tegmental area, A5 NE cell group nTPM: 80.8
2840
Female, age 85, both hemispheres
109.7
1959
Male, age 76, both hemispheres
82.1
2359
Male, age 61, both hemispheres
79.8
2161
Male, age 80, both hemispheres
76.0
2456
Female, age 91, both hemispheres
70.3
2449
Male, age 74, both hemispheres
67.1
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
38.5
Pig sample
Sample description
nTPM
Pons nTPM: 38.6
Samples: 4
Max nTPM: 43.7
Min nTPM: 28.1
Sample A
Female
28.1
Sample B
Female
42.6
Sample C
Male
39.8
Sample D
Male
43.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.