MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:138.8 nTPM
HPA Brain:190.5 nTPM
GTEx:138.8 nTPM
FANTOM5:114.4 Scaled Tags Per Million
Pig:83.0 nTPM
Mouse:418.5 nTPM
Allen mouse:10.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 190.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.0
2586 Male, age 75, left hemisphere 240.0
1870 Female, age 42, unknown 155.9
1833 Male, age 53, unknown 150.7
2828 Female, age 72, unknown 143.9
1827 Male, age 72, unknown 141.7
1830 Male, age 51, unknown 121.4
2411 Female, age 72, unknown 109.0
2666 Male, age 74, left hemisphere 91.4
2219 Male, age 76, both hemispheres 90.1
2019 Male, age 18, unknown 76.0
Dorsal raphe nucleus
nTPM: 177.1
2016 Female, age 72, unknown 213.6
1828 Male, age 53, unknown 202.4
2298 Female, age 72, unknown 184.3
2047 Male, age 72, unknown 165.1
2750 Male, age 76, both hemispheres 120.1
Inferior colliculus
nTPM: 190.5
1848 Female, age 42, unknown 208.7
2097 Female, age 72, unknown 200.1
1890 Male, age 53, unknown 177.0
2849 Male, age 72, unknown 176.0
Median raphe nucleus
nTPM: 113.6
2220 Male, age 76, midline 113.6
Periaquaductal grey, anterior
nTPM: 182.4
1947 Male, age 18, unknown 257.5
1795 Male, age 51, unknown 153.2
2502 Female, age 75, unknown 136.3
Periaquaductal grey, dorsal
nTPM: 165.5
1840 Male, age 53, unknown 203.7
2850 Male, age 76, both hemispheres 170.5
2464 Female, age 72, unknown 160.9
1831 Male, age 72, unknown 126.8
Periaquaductal grey, lateral
nTPM: 169.4
2053 Male, age 18, unknown 214.7
2140 Male, age 76, both hemispheres 167.6
2272 Male, age 74, both hemispheres 125.9
Pretectal area
nTPM: 152.1
2667 Female, age 75, unknown 192.8
2825 Male, age 18, unknown 187.6
2273 Male, age 74, both hemispheres 177.6
2224 Female, age 72, unknown 177.4
1817 Female, age 42, unknown 157.4
1944 Female, age 72, unknown 152.0
2316 Male, age 76, right hemisphere 137.7
1816 Male, age 51, unknown 137.1
2407 Male, age 75, both hemispheres 125.6
1815 Male, age 53, unknown 119.8
2007 Male, age 72, unknown 108.2
Red nucleus
nTPM: 144.8
1821 Female, age 72, unknown 194.3
1954 Female, age 42, unknown 172.5
2769 Male, age 72, unknown 168.1
2227 Male, age 72, unknown 163.9
2503 Female, age 72, unknown 163.9
2725 Female, age 75, unknown 152.5
2823 Male, age 76, right hemisphere 151.9
1904 Male, age 53, unknown 144.2
1865 Male, age 51, unknown 136.9
2584 Male, age 75, left hemisphere 112.3
2588 Male, age 74, left hemisphere 106.0
2785 Male, age 18, unknown 71.3
Substantia nigra
nTPM: 148.4
2699 Male, age 18, unknown 206.8
1916 Female, age 42, unknown 186.3
2241 Male, age 72, unknown 170.2
1889 Female, age 72, unknown 160.9
1851 Male, age 51, unknown 160.4
2409 Female, age 72, unknown 132.4
2583 Male, age 75, right hemisphere 127.0
2590 Female, age 75, unknown 123.9
1941 Male, age 53, unknown 110.5
2665 Male, age 74, both hemispheres 105.5
Superior colliculus
nTPM: 134.1
2664 Male, age 75, both hemispheres 146.7
1995 Male, age 72, unknown 145.5
2087 Female, age 72, unknown 145.1
2668 Female, age 75, unknown 143.5
1839 Male, age 51, unknown 142.9
1796 Male, age 53, unknown 140.9
2261 Male, age 18, unknown 126.4
1913 Female, age 42, unknown 119.9
2587 Male, age 74, left hemisphere 115.3
1895 Male, age 76, right hemisphere 115.1
Ventral tegmental area
nTPM: 142.3
1915 Female, age 42, unknown 182.6
1942 Male, age 51, unknown 156.8
2410 Female, age 72, unknown 149.7
2021 Male, age 53, unknown 130.3
2218 Male, age 76, both hemispheres 123.3
2223 Female, age 72, unknown 111.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 138.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 138.8
Samples: 139

Max nTPM: 386.6
Min nTPM: 14.2
Std nTPM: 76.6
Median nTPM: 128.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 386.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 379.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 355.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 349.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 345.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 339.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 316.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 307.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 307.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 261.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 261.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.4
FF:10158-103A5 76 years, female 114.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.4
Samples: 4

Max nTPM: 80.7
Min nTPM: 66.3
Sample A Female 80.7
Sample B Female 66.3
Sample C Male 78.1
Sample D Male 80.3
Midbrain
nTPM: 83.0
Samples: 4

Max nTPM: 99.4
Min nTPM: 69.0
Sample A Female 75.7
Sample B Female 69.0
Sample C Male 99.4
Sample D Male 87.7
Periaqueductal gray
nTPM: 61.0
Samples: 3

Max nTPM: 70.2
Min nTPM: 50.1
Sample B Female 70.2
Sample C Male 62.8
Sample D Male 50.1
Superior colliculi
nTPM: 82.7
Samples: 4

Max nTPM: 91.2
Min nTPM: 68.3
Sample A Female 88.4
Sample B Female 91.2
Sample C Male 68.3
Sample D Male 82.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 418.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 418.6
Samples: 4

Max nTPM: 440.7
Min nTPM: 408.3
Sample A Male 440.7
Sample B Male 408.3
Sample C Female 409.3
Sample D Female 415.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.8
70429429 Antisense, RP_050614_01_F06, Mouse strain C57BL/6J (56 days, male) 11.8
74047768 Antisense, RP_051214_01_H06, Mouse strain C57BL/6J (56 days, male) 9.9

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