MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.0 nTPM
HPA Brain:84.5 nTPM
GTEx:22.0 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:38.2 nTPM
Mouse:38.2 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.6
2586 Male, age 75, left hemisphere 115.9
2666 Male, age 74, left hemisphere 92.5
2828 Female, age 72, unknown 82.8
1827 Male, age 72, unknown 73.3
2219 Male, age 76, both hemispheres 68.4
1833 Male, age 53, unknown 64.1
2019 Male, age 18, unknown 63.0
1870 Female, age 42, unknown 53.7
1830 Male, age 51, unknown 53.3
2411 Female, age 72, unknown 49.2
Dorsal raphe nucleus
nTPM: 55.8
2047 Male, age 72, unknown 61.6
1828 Male, age 53, unknown 57.8
2750 Male, age 76, both hemispheres 57.8
2298 Female, age 72, unknown 55.1
2016 Female, age 72, unknown 46.6
Inferior colliculus
nTPM: 67.4
2849 Male, age 72, unknown 78.1
1848 Female, age 42, unknown 71.7
1890 Male, age 53, unknown 60.2
2097 Female, age 72, unknown 59.7
Median raphe nucleus
nTPM: 58.0
2220 Male, age 76, midline 58.0
Periaquaductal grey, anterior
nTPM: 81.1
2502 Female, age 75, unknown 87.2
1795 Male, age 51, unknown 86.3
1947 Male, age 18, unknown 69.8
Periaquaductal grey, dorsal
nTPM: 63.9
1840 Male, age 53, unknown 74.0
1831 Male, age 72, unknown 63.4
2464 Female, age 72, unknown 61.6
2850 Male, age 76, both hemispheres 56.8
Periaquaductal grey, lateral
nTPM: 58.8
2053 Male, age 18, unknown 64.6
2140 Male, age 76, both hemispheres 62.6
2272 Male, age 74, both hemispheres 49.3
Pretectal area
nTPM: 84.5
1816 Male, age 51, unknown 138.2
2007 Male, age 72, unknown 113.7
1817 Female, age 42, unknown 106.2
1944 Female, age 72, unknown 106.2
1815 Male, age 53, unknown 104.2
2407 Male, age 75, both hemispheres 72.3
2667 Female, age 75, unknown 65.3
2825 Male, age 18, unknown 65.3
2316 Male, age 76, right hemisphere 63.0
2224 Female, age 72, unknown 49.8
2273 Male, age 74, both hemispheres 44.7
Red nucleus
nTPM: 64.7
2584 Male, age 75, left hemisphere 99.9
2588 Male, age 74, left hemisphere 71.7
2785 Male, age 18, unknown 68.7
2823 Male, age 76, right hemisphere 65.9
2769 Male, age 72, unknown 64.9
2725 Female, age 75, unknown 64.8
2227 Male, age 72, unknown 63.4
1904 Male, age 53, unknown 62.9
1954 Female, age 42, unknown 61.8
2503 Female, age 72, unknown 52.1
1865 Male, age 51, unknown 51.7
1821 Female, age 72, unknown 49.0
Substantia nigra
nTPM: 72.7
2583 Male, age 75, right hemisphere 95.9
2665 Male, age 74, both hemispheres 87.3
1916 Female, age 42, unknown 85.2
1889 Female, age 72, unknown 82.1
2590 Female, age 75, unknown 79.3
2699 Male, age 18, unknown 68.7
1851 Male, age 51, unknown 66.1
2409 Female, age 72, unknown 60.9
1941 Male, age 53, unknown 57.2
2241 Male, age 72, unknown 44.6
Superior colliculus
nTPM: 77.5
2664 Male, age 75, both hemispheres 102.8
2261 Male, age 18, unknown 101.6
2087 Female, age 72, unknown 99.9
1796 Male, age 53, unknown 84.6
2668 Female, age 75, unknown 75.1
1839 Male, age 51, unknown 69.5
1913 Female, age 42, unknown 62.3
1895 Male, age 76, right hemisphere 61.0
1995 Male, age 72, unknown 60.8
2587 Male, age 74, left hemisphere 57.7
Ventral tegmental area
nTPM: 59.5
1915 Female, age 42, unknown 64.3
2410 Female, age 72, unknown 62.9
2218 Male, age 76, both hemispheres 60.5
1942 Male, age 51, unknown 59.6
2223 Female, age 72, unknown 59.0
2021 Male, age 53, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.0
Samples: 139

Max nTPM: 60.5
Min nTPM: 8.6
Std nTPM: 7.5
Median nTPM: 21.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 41.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 36.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 35.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 35.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 34.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 34.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 34.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 33.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 33.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 33.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.5
Samples: 4

Max nTPM: 43.3
Min nTPM: 19.8
Sample A Female 32.8
Sample B Female 26.0
Sample C Male 43.3
Sample D Male 19.8
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 72.2
Min nTPM: 22.2
Sample A Female 22.2
Sample B Female 23.2
Sample C Male 72.2
Sample D Male 35.1
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 36.0
Min nTPM: 21.8
Sample B Female 21.8
Sample C Male 36.0
Sample D Male 22.9
Superior colliculi
nTPM: 32.8
Samples: 4

Max nTPM: 42.9
Min nTPM: 26.9
Sample A Female 26.9
Sample B Female 27.0
Sample C Male 42.9
Sample D Male 34.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 40.8
Min nTPM: 33.2
Sample A Male 38.6
Sample B Male 33.2
Sample C Female 40.8
Sample D Female 40.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
69863296 Antisense, RP_050331_04_H03, Mouse strain C57BL/6J (56 days, male) 4.9
74988711 Antisense, RP_060315_04_A10, Mouse strain C57BL/6J (56 days, male) 3.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org