HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:8.5 nTPM
HPA Brain:39.5 nTPM
GTEx:8.5 nTPM
FANTOM5:66.6 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:44.2 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042411Antibody HPA049031
Glial cells Not detectedLow
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Hippocampus
nTPM: 35.7
1911 Female, age 85, right hemisphere 42.1
2529 Female, age 94, left hemisphere 36.2
2148 Female, age 91, left hemisphere 35.2
1898 Male, age 80, left hemisphere 34.3
2621 Female, age 67, right hemisphere 33.3
1855 Male, age 76, left hemisphere 33.2
Dentate gyrus
nTPM: 35.6
2246 Female, age 85, both hemispheres 40.9
1927 Female, age 91, both hemispheres 39.7
2528 Male, age 74, both hemispheres 35.7
2010 Male, age 76, both hemispheres 35.6
2531 Female, age 67, both hemispheres 33.0
2530 Female, age 94, left hemisphere 28.5
Entorhinal gyrus
nTPM: 33.1
1938 Female, age 85, left hemisphere 37.5
2117 Female, age 91, right hemisphere 34.8
2764 Male, age 80, right hemisphere 32.4
2613 Female, age 94, left hemisphere 31.9
2686 Male, age 75, right hemisphere 31.4
1787 Male, age 76, left hemisphere 30.8
Hippocampus, CA1
nTPM: 35.0
2527 Male, age 74, both hemispheres 38.5
1873 Female, age 85, both hemispheres 38.2
2082 Female, age 91, right hemisphere 34.5
2749 Male, age 80, left hemisphere 33.2
2045 Male, age 76, both hemispheres 30.5
Hippocampus, CA2
nTPM: 35.7
2249 Male, age 74, both hemispheres 38.3
1940 Female, age 85, left hemisphere 38.2
2113 Female, age 91, right hemisphere 37.7
1892 Male, age 76, both hemispheres 35.8
2437 Female, age 94, left hemisphere 32.1
1963 Male, age 80, left hemisphere 32.0
Hippocampus, CA3
nTPM: 36.0
1891 Female, age 85, both hemispheres 46.2
2620 Female, age 94, left hemisphere 38.8
2137 Male, age 80, left hemisphere 34.7
1867 Male, age 76, both hemispheres 33.1
2436 Male, age 74, both hemispheres 31.9
2861 Female, age 67, both hemispheres 31.2
Parahippocampal cortex
nTPM: 37.3
2692 Male, age 74, both hemispheres 43.6
1850 Male, age 80, both hemispheres 42.5
2693 Female, age 94, both hemispheres 42.1
2622 Female, age 67, right hemisphere 39.0
1933 Female, age 85, both hemispheres 36.8
1990 Female, age 91, right hemisphere 35.8
2532 Female, age 72, left hemisphere 35.8
2245 Female, age 91, both hemispheres 34.3
2018 Male, age 76, both hemispheres 32.1
2250 Female, age 67, right hemisphere 31.4
Perirhinal gyrus
nTPM: 39.0
2521 Female, age 94, right hemisphere 42.5
1847 Female, age 91, left hemisphere 39.7
2848 Male, age 76, right hemisphere 38.2
1841 Female, age 85, right hemisphere 38.0
1794 Male, age 80, right hemisphere 36.5
Subiculum
nTPM: 39.5
2729 Female, age 91, right hemisphere 43.6
2438 Female, age 94, left hemisphere 41.7
1901 Male, age 80, both hemispheres 40.7
2619 Male, age 74, both hemispheres 39.2
2042 Male, age 76, both hemispheres 36.9
1977 Female, age 85, both hemispheres 35.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.5
Samples: 197

Max nTPM: 14.0
Min nTPM: 4.0
Std nTPM: 1.5
Median nTPM: 8.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 14.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 13.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 12.9
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 12.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 12.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 12.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 12.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 12.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 11.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 11.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 11.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.6
FF:10169-103B7 60 years, female 79.9
FF:10153-102I9 76 years, female 53.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.5
Pig sample Sample description nTPM
Subiculum
nTPM: 19.0
Samples: 4

Max nTPM: 21.5
Min nTPM: 17.0
Sample A Female 21.5
Sample B Female 19.1
Sample C Male 18.2
Sample D Male 17.0
Dorsal hippocampus
nTPM: 20.4
Samples: 4

Max nTPM: 22.3
Min nTPM: 18.7
Sample A Female 22.3
Sample B Female 20.6
Sample C Male 20.1
Sample D Male 18.7
Entorhinal cortex
nTPM: 18.9
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.6
Sample A Female 19.1
Sample B Female 20.4
Sample C Male 18.6
Sample D Male 17.6
Ventral hippocampus
nTPM: 18.1
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.2
Sample A Female 19.7
Sample B Female 17.2
Sample C Male 17.8
Sample D Male 17.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 44.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.1
Samples: 4

Max nTPM: 39.9
Min nTPM: 33.8
Sample A Male 33.8
Sample B Male 35.4
Sample C Female 39.3
Sample D Female 39.9
Hippocampal formation
nTPM: 44.2
Samples: 4

Max nTPM: 47.7
Min nTPM: 40.6
Sample A Male 45.1
Sample B Male 43.4
Sample C Female 47.7
Sample D Female 40.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
70786694 Antisense, RP_050706_03_A08, Mouse strain C57BL/6J (56 days, male) 2.8

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