MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.2 nTPM
HPA Brain:38.7 nTPM
GTEx:8.2 nTPM
FANTOM5:27.8 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:33.0 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
1830 Male, age 51, unknown 42.0
2219 Male, age 76, both hemispheres 40.9
2019 Male, age 18, unknown 36.1
1833 Male, age 53, unknown 35.5
1827 Male, age 72, unknown 35.3
2411 Female, age 72, unknown 34.4
2666 Male, age 74, left hemisphere 33.6
1870 Female, age 42, unknown 32.1
2586 Male, age 75, left hemisphere 31.8
2828 Female, age 72, unknown 31.5
Dorsal raphe nucleus
nTPM: 36.1
2016 Female, age 72, unknown 43.8
2750 Male, age 76, both hemispheres 39.9
1828 Male, age 53, unknown 35.4
2047 Male, age 72, unknown 33.6
2298 Female, age 72, unknown 27.8
Inferior colliculus
nTPM: 38.0
1890 Male, age 53, unknown 41.6
2097 Female, age 72, unknown 40.0
1848 Female, age 42, unknown 37.4
2849 Male, age 72, unknown 33.1
Median raphe nucleus
nTPM: 30.7
2220 Male, age 76, midline 30.7
Periaquaductal grey, anterior
nTPM: 34.0
1947 Male, age 18, unknown 38.0
2502 Female, age 75, unknown 33.7
1795 Male, age 51, unknown 30.4
Periaquaductal grey, dorsal
nTPM: 38.7
1831 Male, age 72, unknown 40.5
2464 Female, age 72, unknown 40.1
1840 Male, age 53, unknown 38.8
2850 Male, age 76, both hemispheres 35.4
Periaquaductal grey, lateral
nTPM: 37.6
2272 Male, age 74, both hemispheres 41.3
2140 Male, age 76, both hemispheres 35.9
2053 Male, age 18, unknown 35.6
Pretectal area
nTPM: 36.6
2407 Male, age 75, both hemispheres 46.3
2667 Female, age 75, unknown 39.7
2273 Male, age 74, both hemispheres 38.0
1944 Female, age 72, unknown 37.3
2825 Male, age 18, unknown 37.1
1817 Female, age 42, unknown 36.9
2224 Female, age 72, unknown 35.2
2007 Male, age 72, unknown 34.9
1815 Male, age 53, unknown 32.7
1816 Male, age 51, unknown 32.7
2316 Male, age 76, right hemisphere 32.0
Red nucleus
nTPM: 36.7
2823 Male, age 76, right hemisphere 43.7
1904 Male, age 53, unknown 41.8
1865 Male, age 51, unknown 39.9
1821 Female, age 72, unknown 39.8
2227 Male, age 72, unknown 39.0
1954 Female, age 42, unknown 36.8
2584 Male, age 75, left hemisphere 35.7
2588 Male, age 74, left hemisphere 33.7
2785 Male, age 18, unknown 33.2
2503 Female, age 72, unknown 32.6
2769 Male, age 72, unknown 32.2
2725 Female, age 75, unknown 32.1
Substantia nigra
nTPM: 37.5
2241 Male, age 72, unknown 48.3
2409 Female, age 72, unknown 43.6
2590 Female, age 75, unknown 41.0
2699 Male, age 18, unknown 40.6
1851 Male, age 51, unknown 35.8
2583 Male, age 75, right hemisphere 35.6
1941 Male, age 53, unknown 35.4
1889 Female, age 72, unknown 33.4
1916 Female, age 42, unknown 31.1
2665 Male, age 74, both hemispheres 29.8
Superior colliculus
nTPM: 36.8
1913 Female, age 42, unknown 43.7
1895 Male, age 76, right hemisphere 41.9
2087 Female, age 72, unknown 39.6
2587 Male, age 74, left hemisphere 37.1
2664 Male, age 75, both hemispheres 36.2
1995 Male, age 72, unknown 36.0
2668 Female, age 75, unknown 34.7
1839 Male, age 51, unknown 34.1
2261 Male, age 18, unknown 33.1
1796 Male, age 53, unknown 31.7
Ventral tegmental area
nTPM: 34.3
2218 Male, age 76, both hemispheres 36.9
2021 Male, age 53, unknown 36.5
1942 Male, age 51, unknown 36.2
1915 Female, age 42, unknown 33.5
2410 Female, age 72, unknown 32.5
2223 Female, age 72, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.2
Samples: 139

Max nTPM: 13.0
Min nTPM: 5.2
Std nTPM: 1.6
Median nTPM: 8.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 13.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 12.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 12.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 12.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 12.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 11.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 11.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 10.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 10.9
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 10.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 10.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.8
FF:10158-103A5 76 years, female 27.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.5
Sample A Female 20.0
Sample B Female 16.5
Sample C Male 18.5
Sample D Male 16.8
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 23.1
Min nTPM: 18.9
Sample A Female 23.1
Sample B Female 18.9
Sample C Male 19.4
Sample D Male 20.4
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 19.0
Min nTPM: 16.3
Sample B Female 17.8
Sample C Male 19.0
Sample D Male 16.3
Superior colliculi
nTPM: 19.2
Samples: 4

Max nTPM: 20.0
Min nTPM: 18.2
Sample A Female 20.0
Sample B Female 19.4
Sample C Male 19.3
Sample D Male 18.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 36.1
Min nTPM: 30.1
Sample A Male 30.1
Sample B Male 32.5
Sample C Female 36.1
Sample D Female 33.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
70786694 Antisense, RP_050706_03_A08, Mouse strain C57BL/6J (56 days, male) 0.5

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