MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.7 nTPM
HPA Brain:27.3 nTPM
GTEx:48.7 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Mouse:44.4 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.8
2586 Male, age 75, left hemisphere 29.1
1827 Male, age 72, unknown 27.8
2828 Female, age 72, unknown 26.6
1870 Female, age 42, unknown 26.5
2019 Male, age 18, unknown 25.9
2666 Male, age 74, left hemisphere 23.6
2411 Female, age 72, unknown 22.9
1833 Male, age 53, unknown 21.2
1830 Male, age 51, unknown 19.8
2219 Male, age 76, both hemispheres 15.0
Dorsal raphe nucleus
nTPM: 25.6
2298 Female, age 72, unknown 30.9
2016 Female, age 72, unknown 26.6
2047 Male, age 72, unknown 25.0
1828 Male, age 53, unknown 24.9
2750 Male, age 76, both hemispheres 20.4
Inferior colliculus
nTPM: 22.2
2097 Female, age 72, unknown 25.2
1890 Male, age 53, unknown 24.3
1848 Female, age 42, unknown 21.2
2849 Male, age 72, unknown 18.2
Median raphe nucleus
nTPM: 17.0
2220 Male, age 76, midline 17.0
Periaquaductal grey, anterior
nTPM: 27.3
1795 Male, age 51, unknown 29.1
2502 Female, age 75, unknown 26.9
1947 Male, age 18, unknown 26.0
Periaquaductal grey, dorsal
nTPM: 22.5
1840 Male, age 53, unknown 23.9
1831 Male, age 72, unknown 22.8
2850 Male, age 76, both hemispheres 22.7
2464 Female, age 72, unknown 20.6
Periaquaductal grey, lateral
nTPM: 24.3
2053 Male, age 18, unknown 25.2
2272 Male, age 74, both hemispheres 24.6
2140 Male, age 76, both hemispheres 23.2
Pretectal area
nTPM: 24.7
2273 Male, age 74, both hemispheres 32.8
2007 Male, age 72, unknown 26.5
1944 Female, age 72, unknown 26.4
1817 Female, age 42, unknown 26.2
1816 Male, age 51, unknown 25.6
2667 Female, age 75, unknown 24.1
1815 Male, age 53, unknown 23.9
2825 Male, age 18, unknown 23.4
2224 Female, age 72, unknown 21.7
2316 Male, age 76, right hemisphere 21.4
2407 Male, age 75, both hemispheres 20.0
Red nucleus
nTPM: 26.3
2725 Female, age 75, unknown 30.6
2769 Male, age 72, unknown 30.6
1821 Female, age 72, unknown 30.4
2503 Female, age 72, unknown 28.3
2227 Male, age 72, unknown 27.3
1904 Male, age 53, unknown 27.0
1865 Male, age 51, unknown 26.5
1954 Female, age 42, unknown 26.0
2588 Male, age 74, left hemisphere 25.2
2823 Male, age 76, right hemisphere 22.1
2785 Male, age 18, unknown 21.5
2584 Male, age 75, left hemisphere 20.4
Substantia nigra
nTPM: 23.3
1851 Male, age 51, unknown 27.7
1889 Female, age 72, unknown 26.9
2699 Male, age 18, unknown 25.8
1916 Female, age 42, unknown 25.1
2665 Male, age 74, both hemispheres 24.6
2583 Male, age 75, right hemisphere 23.2
1941 Male, age 53, unknown 22.3
2590 Female, age 75, unknown 19.8
2409 Female, age 72, unknown 19.7
2241 Male, age 72, unknown 18.3
Superior colliculus
nTPM: 24.1
2664 Male, age 75, both hemispheres 29.9
2587 Male, age 74, left hemisphere 25.3
2261 Male, age 18, unknown 25.1
1796 Male, age 53, unknown 24.8
2087 Female, age 72, unknown 24.7
2668 Female, age 75, unknown 24.6
1995 Male, age 72, unknown 23.3
1913 Female, age 42, unknown 21.4
1895 Male, age 76, right hemisphere 20.9
1839 Male, age 51, unknown 20.8
Ventral tegmental area
nTPM: 22.5
1915 Female, age 42, unknown 26.8
2410 Female, age 72, unknown 25.8
1942 Male, age 51, unknown 22.5
2021 Male, age 53, unknown 21.3
2223 Female, age 72, unknown 19.4
2218 Male, age 76, both hemispheres 19.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.7
Samples: 139

Max nTPM: 106.9
Min nTPM: 21.4
Std nTPM: 14.1
Median nTPM: 47.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 106.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 106.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 86.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 84.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 80.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 79.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 73.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 70.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 69.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 68.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 68.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.4
Samples: 4

Max nTPM: 50.4
Min nTPM: 39.7
Sample A Male 50.4
Sample B Male 41.4
Sample C Female 39.7
Sample D Female 46.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
76003661 Antisense, RP_060608_03_A05, Mouse strain C57BL/6J (56 days, male) 1.2

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