MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:450.3 nTPM
HPA Brain:453.5 nTPM
GTEx:450.3 nTPM
FANTOM5:295.7 Scaled Tags Per Million
Pig:216.9 nTPM
Mouse:91.6 nTPM
Allen mouse:25.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 453.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 305.1
2586 Male, age 75, left hemisphere 431.9
1870 Female, age 42, unknown 343.2
1833 Male, age 53, unknown 330.7
2828 Female, age 72, unknown 329.8
2411 Female, age 72, unknown 329.1
1830 Male, age 51, unknown 296.9
1827 Male, age 72, unknown 265.1
2219 Male, age 76, both hemispheres 264.7
2666 Male, age 74, left hemisphere 237.0
2019 Male, age 18, unknown 223.0
Dorsal raphe nucleus
nTPM: 443.8
2047 Male, age 72, unknown 502.6
2298 Female, age 72, unknown 454.8
2750 Male, age 76, both hemispheres 434.9
1828 Male, age 53, unknown 434.7
2016 Female, age 72, unknown 392.2
Inferior colliculus
nTPM: 347.2
1848 Female, age 42, unknown 417.8
2849 Male, age 72, unknown 349.6
1890 Male, age 53, unknown 322.0
2097 Female, age 72, unknown 299.5
Median raphe nucleus
nTPM: 453.5
2220 Male, age 76, midline 453.5
Periaquaductal grey, anterior
nTPM: 324.0
1795 Male, age 51, unknown 356.8
1947 Male, age 18, unknown 313.8
2502 Female, age 75, unknown 301.3
Periaquaductal grey, dorsal
nTPM: 342.3
2850 Male, age 76, both hemispheres 445.5
1840 Male, age 53, unknown 392.0
2464 Female, age 72, unknown 298.8
1831 Male, age 72, unknown 233.1
Periaquaductal grey, lateral
nTPM: 344.9
2140 Male, age 76, both hemispheres 399.3
2272 Male, age 74, both hemispheres 340.5
2053 Male, age 18, unknown 294.7
Pretectal area
nTPM: 299.4
2273 Male, age 74, both hemispheres 404.1
2825 Male, age 18, unknown 400.9
2224 Female, age 72, unknown 393.5
2667 Female, age 75, unknown 322.6
1817 Female, age 42, unknown 315.7
2316 Male, age 76, right hemisphere 277.1
1944 Female, age 72, unknown 244.6
1816 Male, age 51, unknown 242.1
1815 Male, age 53, unknown 236.9
2407 Male, age 75, both hemispheres 229.8
2007 Male, age 72, unknown 226.0
Red nucleus
nTPM: 373.2
2227 Male, age 72, unknown 515.1
2769 Male, age 72, unknown 501.7
1821 Female, age 72, unknown 459.4
1954 Female, age 42, unknown 458.4
1904 Male, age 53, unknown 407.5
2503 Female, age 72, unknown 400.0
1865 Male, age 51, unknown 370.9
2823 Male, age 76, right hemisphere 322.4
2588 Male, age 74, left hemisphere 317.8
2725 Female, age 75, unknown 260.3
2785 Male, age 18, unknown 243.9
2584 Male, age 75, left hemisphere 220.6
Substantia nigra
nTPM: 451.1
1916 Female, age 42, unknown 806.4
2699 Male, age 18, unknown 706.8
1851 Male, age 51, unknown 499.1
2241 Male, age 72, unknown 445.7
2590 Female, age 75, unknown 384.0
2665 Male, age 74, both hemispheres 364.0
1941 Male, age 53, unknown 348.3
1889 Female, age 72, unknown 334.8
2409 Female, age 72, unknown 328.9
2583 Male, age 75, right hemisphere 293.1
Superior colliculus
nTPM: 264.3
2668 Female, age 75, unknown 385.8
1796 Male, age 53, unknown 311.8
2587 Male, age 74, left hemisphere 287.9
1839 Male, age 51, unknown 271.2
2261 Male, age 18, unknown 269.4
2087 Female, age 72, unknown 262.3
2664 Male, age 75, both hemispheres 237.3
1995 Male, age 72, unknown 223.8
1895 Male, age 76, right hemisphere 220.4
1913 Female, age 42, unknown 173.3
Ventral tegmental area
nTPM: 436.6
2223 Female, age 72, unknown 536.1
1915 Female, age 42, unknown 510.3
2218 Male, age 76, both hemispheres 415.2
2021 Male, age 53, unknown 400.0
2410 Female, age 72, unknown 380.9
1942 Male, age 51, unknown 377.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 450.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 450.3
Samples: 139

Max nTPM: 2587.2
Min nTPM: 141.2
Std nTPM: 298.3
Median nTPM: 389.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2587.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1877.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1496.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1157.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1104.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1093.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 979.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 955.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 760.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 751.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 744.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 295.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 295.7
FF:10158-103A5 76 years, female 295.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 216.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 216.9
Samples: 4

Max nTPM: 339.9
Min nTPM: 141.1
Sample A Female 220.9
Sample B Female 141.1
Sample C Male 339.9
Sample D Male 165.8
Midbrain
nTPM: 201.3
Samples: 4

Max nTPM: 324.1
Min nTPM: 104.8
Sample A Female 324.1
Sample B Female 173.6
Sample C Male 202.7
Sample D Male 104.8
Periaqueductal gray
nTPM: 193.6
Samples: 3

Max nTPM: 299.5
Min nTPM: 123.9
Sample B Female 157.3
Sample C Male 299.5
Sample D Male 123.9
Superior colliculi
nTPM: 121.2
Samples: 4

Max nTPM: 175.9
Min nTPM: 66.4
Sample A Female 128.8
Sample B Female 66.4
Sample C Male 175.9
Sample D Male 113.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 91.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 91.6
Samples: 4

Max nTPM: 99.7
Min nTPM: 82.1
Sample A Male 99.7
Sample B Male 90.0
Sample C Female 82.1
Sample D Female 94.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.0
69854163 Antisense, RP_050324_04_C01, Mouse strain C57BL/6J (56 days, male) 26.8
74819689 Antisense, RP_060315_02_H05, Mouse strain C57BL/6J (56 days, male) 25.4
69838608 Antisense, RP_050310_02_C05, Mouse strain C57BL/6J (56 days, male) 22.6

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