MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA Brain:155.7 nTPM
GTEx:27.5 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:124.0 nTPM
Mouse:88.9 nTPM
Allen mouse:13.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 155.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.4
2586 Male, age 75, left hemisphere 197.6
1827 Male, age 72, unknown 153.6
2828 Female, age 72, unknown 144.6
2219 Male, age 76, both hemispheres 141.2
2666 Male, age 74, left hemisphere 135.4
1833 Male, age 53, unknown 120.2
2411 Female, age 72, unknown 114.0
1830 Male, age 51, unknown 105.4
1870 Female, age 42, unknown 99.6
2019 Male, age 18, unknown 82.2
Dorsal raphe nucleus
nTPM: 119.1
2047 Male, age 72, unknown 141.8
2298 Female, age 72, unknown 130.5
2750 Male, age 76, both hemispheres 109.0
2016 Female, age 72, unknown 108.9
1828 Male, age 53, unknown 105.5
Inferior colliculus
nTPM: 118.1
2097 Female, age 72, unknown 124.1
1848 Female, age 42, unknown 123.4
2849 Male, age 72, unknown 122.0
1890 Male, age 53, unknown 103.0
Median raphe nucleus
nTPM: 122.3
2220 Male, age 76, midline 122.3
Periaquaductal grey, anterior
nTPM: 137.0
1947 Male, age 18, unknown 148.6
2502 Female, age 75, unknown 136.7
1795 Male, age 51, unknown 125.6
Periaquaductal grey, dorsal
nTPM: 107.0
1840 Male, age 53, unknown 129.0
2464 Female, age 72, unknown 116.6
1831 Male, age 72, unknown 96.3
2850 Male, age 76, both hemispheres 86.3
Periaquaductal grey, lateral
nTPM: 92.9
2053 Male, age 18, unknown 113.1
2140 Male, age 76, both hemispheres 92.2
2272 Male, age 74, both hemispheres 73.5
Pretectal area
nTPM: 115.5
1816 Male, age 51, unknown 142.7
1944 Female, age 72, unknown 137.0
1817 Female, age 42, unknown 129.0
2667 Female, age 75, unknown 127.1
2825 Male, age 18, unknown 124.8
2007 Male, age 72, unknown 123.4
1815 Male, age 53, unknown 120.9
2224 Female, age 72, unknown 107.7
2407 Male, age 75, both hemispheres 96.0
2316 Male, age 76, right hemisphere 90.9
2273 Male, age 74, both hemispheres 70.7
Red nucleus
nTPM: 107.5
2588 Male, age 74, left hemisphere 136.9
2503 Female, age 72, unknown 113.3
1821 Female, age 72, unknown 112.5
2823 Male, age 76, right hemisphere 109.1
1904 Male, age 53, unknown 108.3
2584 Male, age 75, left hemisphere 108.0
2725 Female, age 75, unknown 107.2
2227 Male, age 72, unknown 105.8
2769 Male, age 72, unknown 105.0
1954 Female, age 42, unknown 102.8
1865 Male, age 51, unknown 99.1
2785 Male, age 18, unknown 82.0
Substantia nigra
nTPM: 155.7
1916 Female, age 42, unknown 216.6
2665 Male, age 74, both hemispheres 201.4
1851 Male, age 51, unknown 166.6
2699 Male, age 18, unknown 165.6
2241 Male, age 72, unknown 156.2
1941 Male, age 53, unknown 136.0
1889 Female, age 72, unknown 134.3
2409 Female, age 72, unknown 132.5
2590 Female, age 75, unknown 126.5
2583 Male, age 75, right hemisphere 121.7
Superior colliculus
nTPM: 116.6
2664 Male, age 75, both hemispheres 148.9
2261 Male, age 18, unknown 141.8
1796 Male, age 53, unknown 138.9
2087 Female, age 72, unknown 122.9
2668 Female, age 75, unknown 122.5
1839 Male, age 51, unknown 117.4
1895 Male, age 76, right hemisphere 112.1
2587 Male, age 74, left hemisphere 107.4
1913 Female, age 42, unknown 78.1
1995 Male, age 72, unknown 76.2
Ventral tegmental area
nTPM: 129.9
1915 Female, age 42, unknown 150.8
2410 Female, age 72, unknown 150.7
2218 Male, age 76, both hemispheres 144.7
1942 Male, age 51, unknown 126.7
2021 Male, age 53, unknown 120.1
2223 Female, age 72, unknown 86.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 27.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 27.5
Samples: 139

Max nTPM: 64.7
Min nTPM: 9.1
Std nTPM: 10.3
Median nTPM: 25.3
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 64.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 60.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 54.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 51.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 51.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 49.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 47.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 46.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 44.3
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.5
FF:10158-103A5 76 years, female 44.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 124.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 124.0
Samples: 4

Max nTPM: 129.7
Min nTPM: 119.2
Sample A Female 124.3
Sample B Female 119.2
Sample C Male 129.7
Sample D Male 122.9
Midbrain
nTPM: 111.3
Samples: 4

Max nTPM: 123.5
Min nTPM: 95.4
Sample A Female 95.4
Sample B Female 116.6
Sample C Male 109.5
Sample D Male 123.5
Periaqueductal gray
nTPM: 121.8
Samples: 3

Max nTPM: 143.8
Min nTPM: 102.6
Sample B Female 119.0
Sample C Male 143.8
Sample D Male 102.6
Superior colliculi
nTPM: 96.5
Samples: 4

Max nTPM: 131.4
Min nTPM: 55.0
Sample A Female 131.4
Sample B Female 55.0
Sample C Male 87.5
Sample D Male 111.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.9
Samples: 4

Max nTPM: 97.0
Min nTPM: 82.4
Sample A Male 82.4
Sample B Male 85.7
Sample C Female 97.0
Sample D Female 90.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.1
70305395 Antisense, RP_050609_04_B01, Mouse strain C57BL/6J (56 days, male) 13.1

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