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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
141.4
nTPM
FANTOM5:
98.7
Scaled Tags Per Million
Pig:
119.3
nTPM
Allen mouse:
9.1
Expression energy
PONS - HPA Brain RNA-seq
Max nTPM
141.4
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 72.5
1984
Male, age 76, both hemispheres
91.8
2301
Female, age 85, both hemispheres
73.8
2090
Male, age 80, both hemispheres
70.5
2188
Female, age 91, both hemispheres
54.0
Dorsal cochlear nucleus nTPM: 95.8
2802
Male, age 74, right hemisphere
112.2
2058
Male, age 76, both hemispheres
101.8
2370
Male, age 61, both hemispheres
97.1
2378
Male, age 80, both hemispheres
87.8
2187
Female, age 91, both hemispheres
80.2
Dorsal tegmental nucleus nTPM: 94.0
2083
Male, age 80, both hemispheres
106.3
1936
Male, age 76, left hemisphere
96.5
2326
Male, age 74, both hemispheres
89.8
2358
Male, age 61, both hemispheres
83.3
Dorsolateral tegmental area nTPM: 93.7
2141
Male, age 76, both hemispheres
122.5
2654
Male, age 80, both hemispheres
101.8
2751
Female, age 85, both hemispheres
94.6
2337
Male, age 61, both hemispheres
78.0
2360
Male, age 74, both hemispheres
71.6
Kolliker-Fuse nucleus nTPM: 78.0
2163
Male, age 80, both hemispheres
96.1
2793
Female, age 91, left hemisphere
73.6
2315
Male, age 76, right hemisphere
64.4
Lateral lemniscal nuclei nTPM: 99.7
2169
Male, age 76, both hemispheres
119.1
2036
Male, age 80, both hemispheres
108.2
2453
Male, age 74, right hemisphere
102.8
2746
Female, age 85, left hemisphere
90.4
2320
Female, age 91, left hemisphere
77.9
Lateral parabrachial nucleus nTPM: 86.9
2139
Female, age 85, right hemisphere
116.4
2790
Male, age 61, both hemispheres
94.2
2013
Male, age 80, both hemispheres
88.9
2792
Male, age 76, both hemispheres
48.3
Lateral vestibular nucleus nTPM: 95.2
2184
Male, age 76, both hemispheres
102.6
2311
Male, age 80, both hemispheres
87.8
Locus coeruleus nTPM: 141.4
2317
Female, age 72, unknown
160.9
2123
Female, age 91, both hemispheres
147.6
2720
Male, age 74, both hemispheres
141.5
2014
Male, age 55, unknown
139.0
2162
Male, age 80, both hemispheres
138.9
1980
Male, age 76, both hemispheres
138.0
2788
Male, age 74, unknown
124.0
Medial parabrachial nucleus nTPM: 94.0
2786
Male, age 76, both hemispheres
107.7
2156
Male, age 61, both hemispheres
97.5
2463
Female, age 85, right hemisphere
97.2
2854
Male, age 80, both hemispheres
89.2
2170
Female, age 91, both hemispheres
78.5
Medial periolivary nuclei nTPM: 95.6
2171
Female, age 85, both hemispheres
122.9
2063
Male, age 76, both hemispheres
116.3
2791
Male, age 74, right hemisphere
86.6
2458
Female, age 91, both hemispheres
78.1
2081
Male, age 80, both hemispheres
74.4
Motor facial nucleus nTPM: 99.2
2062
Male, age 76, both hemispheres
132.0
2795
Female, age 91, both hemispheres
112.7
2327
Male, age 80, both hemispheres
100.8
2365
Male, age 74, right hemisphere
84.6
2697
Female, age 85, both hemispheres
84.4
2126
Male, age 61, both hemispheres
81.0
Motor trigeminal nucleus nTPM: 94.9
2309
Male, age 76, both hemispheres
106.5
2079
Male, age 80, both hemispheres
98.5
2335
Male, age 61, both hemispheres
96.0
2560
Male, age 74, both hemispheres
95.9
2321
Female, age 91, both hemispheres
77.8
Nuclei of the trapezoid body nTPM: 103.7
2735
Female, age 85, both hemispheres
121.7
1983
Male, age 76, both hemispheres
113.7
2368
Female, age 91, both hemispheres
100.5
2159
Male, age 61, both hemispheres
96.7
2166
Male, age 80, both hemispheres
86.1
Nucleus raphe magnus nTPM: 104.7
2172
Female, age 85, both hemispheres
121.3
2160
Male, age 61, both hemispheres
112.8
2051
Male, age 76, both hemispheres
105.0
2328
Male, age 80, both hemispheres
98.0
2455
Male, age 74, both hemispheres
97.8
2459
Female, age 91, both hemispheres
93.0
Paramedian reticular nucleus nTPM: 98.6
2313
Male, age 61, both hemispheres
115.0
2050
Female, age 85, both hemispheres
106.2
2057
Male, age 80, both hemispheres
103.8
2052
Male, age 76, both hemispheres
69.6
Pedunculopontine tegmental nucleus nTPM: 99.1
1921
Female, age 85, both hemispheres
118.8
2334
Male, age 80, both hemispheres
106.5
2338
Male, age 61, both hemispheres
71.9
Pontine nuclei nTPM: 92.5
2787
Female, age 85, both hemispheres
129.1
1968
Male, age 76, left hemisphere
114.1
1863
Male, age 55, unknown
102.8
2727
Male, age 61, right hemisphere
100.0
2115
Male, age 80, left hemisphere
86.1
2109
Female, age 72, unknown
84.8
2454
Male, age 74, left hemisphere
64.8
2319
Female, age 91, both hemispheres
58.7
Pontine raphe nucleus nTPM: 123.7
2853
Male, age 76, midline
135.6
2122
Female, age 85, midline
111.7
Posteroventral cochlear nucleus nTPM: 77.6
2752
Female, age 85, both hemispheres
115.4
2371
Male, age 61, both hemispheres
90.7
2070
Male, age 76, both hemispheres
86.7
2341
Male, age 80, both hemispheres
59.3
2135
Female, age 91, both hemispheres
36.0
Principal sensory trigeminal nucleus nTPM: 92.7
2158
Male, age 61, both hemispheres
107.0
2008
Male, age 80, left hemisphere
101.4
2324
Male, age 76, both hemispheres
97.0
2367
Female, age 91, left hemisphere
65.2
Reticular pontine nucleus, caudal nTPM: 91.3
2332
Male, age 80, right hemisphere
110.3
2092
Male, age 76, both hemispheres
92.9
2457
Female, age 91, both hemispheres
83.1
2559
Male, age 74, both hemispheres
78.8
Reticular pontine nucleus, oral nTPM: 91.7
2167
Male, age 76, both hemispheres
118.1
2012
Female, age 85, both hemispheres
103.9
1939
Male, age 80, both hemispheres
102.9
2361
Male, age 74, both hemispheres
68.2
2366
Female, age 91, both hemispheres
65.5
Reticulotegmental nucleus nTPM: 112.3
2325
Male, age 76, both hemispheres
125.1
2452
Male, age 74, both hemispheres
111.5
2333
Male, age 80, both hemispheres
111.2
2322
Female, age 91, both hemispheres
101.5
Spinal trigeminal nucleus, oral nTPM: 92.8
1978
Male, age 76, both hemispheres
97.9
2737
Female, age 85, both hemispheres
91.8
2164
Male, age 80, both hemispheres
88.7
Subcoeruleus area nTPM: 107.9
2323
Female, age 91, left hemisphere
122.7
2451
Male, age 74, both hemispheres
121.8
2089
Male, age 76, left hemisphere
110.3
1958
Male, age 80, both hemispheres
95.3
2369
Female, age 85, left hemisphere
89.6
Superior olive nTPM: 91.4
1875
Female, age 85, both hemispheres
108.2
2020
Male, age 76, both hemispheres
94.1
2561
Female, age 91, both hemispheres
90.2
2329
Male, age 80, right hemisphere
88.3
2364
Male, age 74, right hemisphere
76.2
Ventral periolivary nuclei nTPM: 99.2
2130
Female, age 85, both hemispheres
124.9
2165
Male, age 80, both hemispheres
98.9
2794
Female, age 91, left hemisphere
91.9
2023
Male, age 76, both hemispheres
81.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 94.4
2359
Male, age 61, both hemispheres
104.9
2449
Male, age 74, both hemispheres
95.5
1959
Male, age 76, both hemispheres
94.4
2840
Female, age 85, both hemispheres
92.7
2161
Male, age 80, both hemispheres
89.6
2456
Female, age 91, both hemispheres
89.3
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
119.3
Pig sample
Sample description
nTPM
Pons nTPM: 119.3
Samples: 4
Max nTPM: 127.0
Min nTPM: 101.4
Sample A
Female
125.2
Sample B
Female
127.0
Sample C
Male
123.4
Sample D
Male
101.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
