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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
104.2
nTPM
Monaco:
233.1
nTPM
Schmiedel:
573.3
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
104.2
HPA sample
nTPM
gdT-cell nTPM: 61.3
Samples: 6
Max nTPM: 75.5
Min nTPM: 49.0
P10809_1007
55.2
P10809_1022
75.5
P10809_1041
49.0
P10809_1060
57.7
P10809_1077
66.8
P10809_1098
63.7
MAIT T-cell nTPM: 78.2
Samples: 6
Max nTPM: 102.3
Min nTPM: 57.3
P10809_1006
66.1
P10809_1024
102.3
P10809_1043
57.3
P10809_1062
72.1
P10809_1083
77.0
P10809_1097
94.2
Memory CD4 T-cell nTPM: 82.3
Samples: 6
Max nTPM: 91.2
Min nTPM: 73.5
P10809_1014
86.7
P10809_1026
73.5
P10809_1045
74.3
P10809_1064
79.5
P10809_1086
91.2
P10809_1113
88.5
Memory CD8 T-cell nTPM: 67.2
Samples: 5
Max nTPM: 82.5
Min nTPM: 53.4
P10809_1012
67.6
P10809_1027
82.5
P10809_1046
53.4
P10809_1065
71.0
P10809_1111
61.7
Naive CD4 T-cell nTPM: 104.2
Samples: 6
Max nTPM: 124.3
Min nTPM: 86.6
P10809_1015
106.0
P10809_1030
103.7
P10809_1049
100.3
P10809_1068
124.3
P10809_1085
86.6
P10809_1112
104.5
Naive CD8 T-cell nTPM: 80.5
Samples: 6
Max nTPM: 94.9
Min nTPM: 66.5
P10809_1016
83.9
P10809_1031
83.4
P10809_1050
69.4
P10809_1069
84.7
P10809_1087
66.5
P10809_1110
94.9
T-reg nTPM: 103.3
Samples: 6
Max nTPM: 131.4
Min nTPM: 76.2
P10809_1018
92.7
P10809_1037
128.1
P10809_1056
96.4
P10809_1075
76.2
P10809_1094
94.7
P10809_1106
131.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
233.1
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 166.7
Samples: 4
Max nTPM: 216.1
Min nTPM: 115.4
RHH5202_R3573
216.1
RHH5230_R3602
115.4
RHH5259_R3631
169.0
RHH5288_R3660
166.3
Effector memory CD8 T-cell nTPM: 164.0
Samples: 4
Max nTPM: 219.2
Min nTPM: 130.7
RHH5203_R3574
219.2
RHH5231_R3603
130.7
RHH5260_R3632
149.7
RHH5289_R3661
156.4
MAIT T-cell nTPM: 169.4
Samples: 4
Max nTPM: 196.8
Min nTPM: 144.5
RHH5233_R3605
174.6
RHH5205_R3576
196.8
RHH5262_R3634
161.6
RHH5297_R3663
144.5
Memory CD4 T-cell TFH nTPM: 232.5
Samples: 4
Max nTPM: 260.5
Min nTPM: 157.9
RHH5300_R3666
157.9
RHH5236_R3608
260.5
RHH5265_R3637
254.3
RHH5208_R3579
257.4
Memory CD4 T-cell Th1 nTPM: 196.0
Samples: 4
Max nTPM: 254.3
Min nTPM: 118.0
RHH5210_R3581
254.3
RHH5302_R3668
204.9
RHH5238_R3610
118.0
RHH5267_R3639
206.9
Memory CD4 T-cell Th1/Th17 nTPM: 201.6
Samples: 4
Max nTPM: 252.6
Min nTPM: 164.5
RHH5303_R3669
198.5
RHH5211_R3582
252.6
RHH5239_R3611
164.5
RHH5268_R3640
190.8
Memory CD4 T-cell Th17 nTPM: 233.1
Samples: 4
Max nTPM: 277.5
Min nTPM: 205.1
RHH5304_R3670
208.9
RHH5212_R3583
205.1
RHH5240_R3612
277.5
RHH5269_R3641
241.0
Memory CD4 T-cell Th2 nTPM: 205.7
Samples: 4
Max nTPM: 238.8
Min nTPM: 173.8
RHH5305_R3671
193.3
RHH5213_R3584
238.8
RHH5241_R3613
173.8
RHH5270_R3642
217.0
Naive CD4 T-cell nTPM: 223.2
Samples: 4
Max nTPM: 274.1
Min nTPM: 179.1
RHH5306_R3672
222.0
RHH5214_R3585
274.1
RHH5242_R3614
179.1
RHH5271_R3643
217.5
Naive CD8 T-cell nTPM: 209.9
Samples: 4
Max nTPM: 315.6
Min nTPM: 154.3
RHH5201_R3572
315.6
RHH5229_R3601
154.3
RHH5258_R3630
177.0
RHH5287_R3659
192.7
Non-Vd2 gdTCR nTPM: 202.9
Samples: 4
Max nTPM: 334.1
Min nTPM: 117.4
RHH5235_R3607
186.3
RHH5264_R3636
173.8
RHH5207_R3578
334.1
RHH5299_R3665
117.4
T-reg nTPM: 192.9
Samples: 4
Max nTPM: 246.2
Min nTPM: 135.3
RHH5301_R3667
135.3
RHH5237_R3609
179.1
RHH5266_R3638
211.0
RHH5209_R3580
246.2
Terminal effector memory CD4 T-cell nTPM: 181.2
Samples: 2
Max nTPM: 181.5
Min nTPM: 180.9
RHH5243_R3615
181.5
RHH5272_R3644
180.9
Terminal effector memory CD8 T-cell nTPM: 163.3
Samples: 4
Max nTPM: 209.9
Min nTPM: 130.6
RHH5232_R3604
145.1
RHH5204_R3575
167.6
RHH5261_R3633
209.9
RHH5296_R3662
130.6
Vd2 gdTCR nTPM: 186.1
Samples: 4
Max nTPM: 219.2
Min nTPM: 128.1
RHH5234_R3606
190.0
RHH5206_R3577
207.2
RHH5263_R3635
219.2
RHH5298_R3664
128.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
