MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.4 nTPM
HPA Brain:25.4 nTPM
GTEx:6.4 nTPM
FANTOM5:17.6 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:13.1 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.2
2219 Male, age 76, both hemispheres 30.4
2019 Male, age 18, unknown 25.1
2411 Female, age 72, unknown 24.7
1833 Male, age 53, unknown 24.5
1830 Male, age 51, unknown 22.3
1827 Male, age 72, unknown 21.0
1870 Female, age 42, unknown 20.5
2666 Male, age 74, left hemisphere 19.9
2828 Female, age 72, unknown 17.3
2586 Male, age 75, left hemisphere 16.5
Dorsal raphe nucleus
nTPM: 21.7
2298 Female, age 72, unknown 22.3
2016 Female, age 72, unknown 22.1
2047 Male, age 72, unknown 22.1
2750 Male, age 76, both hemispheres 22.0
1828 Male, age 53, unknown 19.9
Inferior colliculus
nTPM: 25.1
2097 Female, age 72, unknown 29.8
1890 Male, age 53, unknown 25.1
1848 Female, age 42, unknown 23.7
2849 Male, age 72, unknown 21.7
Median raphe nucleus
nTPM: 23.6
2220 Male, age 76, midline 23.6
Periaquaductal grey, anterior
nTPM: 21.8
2502 Female, age 75, unknown 25.0
1947 Male, age 18, unknown 21.7
1795 Male, age 51, unknown 18.7
Periaquaductal grey, dorsal
nTPM: 22.1
2464 Female, age 72, unknown 23.7
1831 Male, age 72, unknown 23.4
1840 Male, age 53, unknown 22.7
2850 Male, age 76, both hemispheres 18.7
Periaquaductal grey, lateral
nTPM: 20.9
2272 Male, age 74, both hemispheres 22.8
2053 Male, age 18, unknown 21.3
2140 Male, age 76, both hemispheres 18.7
Pretectal area
nTPM: 22.1
1944 Female, age 72, unknown 25.9
1816 Male, age 51, unknown 25.4
2273 Male, age 74, both hemispheres 24.4
2007 Male, age 72, unknown 24.3
2224 Female, age 72, unknown 22.4
1817 Female, age 42, unknown 21.3
1815 Male, age 53, unknown 20.9
2316 Male, age 76, right hemisphere 20.7
2407 Male, age 75, both hemispheres 20.4
2667 Female, age 75, unknown 19.3
2825 Male, age 18, unknown 18.8
Red nucleus
nTPM: 20.7
2503 Female, age 72, unknown 23.2
1865 Male, age 51, unknown 22.1
2785 Male, age 18, unknown 21.7
2725 Female, age 75, unknown 21.4
2588 Male, age 74, left hemisphere 20.9
1821 Female, age 72, unknown 20.8
1904 Male, age 53, unknown 20.4
2227 Male, age 72, unknown 20.4
1954 Female, age 42, unknown 20.3
2823 Male, age 76, right hemisphere 19.9
2769 Male, age 72, unknown 18.8
2584 Male, age 75, left hemisphere 18.1
Substantia nigra
nTPM: 25.4
2241 Male, age 72, unknown 30.1
2409 Female, age 72, unknown 29.1
1916 Female, age 42, unknown 28.6
1941 Male, age 53, unknown 28.4
1851 Male, age 51, unknown 25.6
2590 Female, age 75, unknown 24.5
1889 Female, age 72, unknown 23.6
2699 Male, age 18, unknown 22.0
2665 Male, age 74, both hemispheres 21.6
2583 Male, age 75, right hemisphere 20.2
Superior colliculus
nTPM: 21.9
1895 Male, age 76, right hemisphere 27.3
2087 Female, age 72, unknown 24.7
2261 Male, age 18, unknown 23.6
2587 Male, age 74, left hemisphere 22.9
2668 Female, age 75, unknown 21.3
1796 Male, age 53, unknown 20.6
1913 Female, age 42, unknown 20.3
1995 Male, age 72, unknown 20.1
1839 Male, age 51, unknown 19.9
2664 Male, age 75, both hemispheres 18.3
Ventral tegmental area
nTPM: 23.3
2218 Male, age 76, both hemispheres 25.3
2410 Female, age 72, unknown 24.7
1915 Female, age 42, unknown 23.8
1942 Male, age 51, unknown 22.9
2021 Male, age 53, unknown 21.6
2223 Female, age 72, unknown 21.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 6.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.4
Samples: 139

Max nTPM: 13.2
Min nTPM: 3.5
Std nTPM: 1.6
Median nTPM: 6.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 11.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 10.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 9.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 9.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 9.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 9.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 8.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 8.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.6
FF:10158-103A5 76 years, female 17.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.4
Samples: 4

Max nTPM: 10.4
Min nTPM: 8.5
Sample A Female 9.6
Sample B Female 8.5
Sample C Male 8.9
Sample D Male 10.4
Midbrain
nTPM: 9.9
Samples: 4

Max nTPM: 11.6
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 9.7
Sample C Male 11.6
Sample D Male 10.8
Periaqueductal gray
nTPM: 9.4
Samples: 3

Max nTPM: 10.1
Min nTPM: 8.7
Sample B Female 9.4
Sample C Male 8.7
Sample D Male 10.1
Superior colliculi
nTPM: 9.0
Samples: 4

Max nTPM: 10.8
Min nTPM: 6.7
Sample A Female 8.6
Sample B Female 6.7
Sample C Male 10.8
Sample D Male 9.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 13.6
Min nTPM: 12.7
Sample A Male 12.7
Sample B Male 12.8
Sample C Female 13.6
Sample D Female 13.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
71281331 Antisense, RP_050818_02_D11, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org