HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:45.8 nTPM
HPA Brain:73.0 nTPM
GTEx:45.8 nTPM
FANTOM5:70.9 Scaled Tags Per Million
Pig:98.3 nTPM
Mouse:189.6 nTPM
Allen mouse:18.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019060Antibody HPA048820
Glial cells MediumHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 73.0
Sample id Sample description nTPM
Hippocampus
nTPM: 59.4
1898 Male, age 80, left hemisphere 75.2
2621 Female, age 67, right hemisphere 63.2
1855 Male, age 76, left hemisphere 62.7
1911 Female, age 85, right hemisphere 56.1
2529 Female, age 94, left hemisphere 51.7
2148 Female, age 91, left hemisphere 47.6
Dentate gyrus
nTPM: 60.9
2010 Male, age 76, both hemispheres 76.0
1927 Female, age 91, both hemispheres 68.1
2530 Female, age 94, left hemisphere 64.7
2246 Female, age 85, both hemispheres 58.4
2528 Male, age 74, both hemispheres 56.4
2531 Female, age 67, both hemispheres 41.9
Entorhinal gyrus
nTPM: 67.2
1787 Male, age 76, left hemisphere 77.8
2764 Male, age 80, right hemisphere 75.1
1938 Female, age 85, left hemisphere 72.7
2117 Female, age 91, right hemisphere 63.6
2613 Female, age 94, left hemisphere 60.5
2686 Male, age 75, right hemisphere 53.5
Hippocampus, CA1
nTPM: 72.5
2749 Male, age 80, left hemisphere 136.0
1873 Female, age 85, both hemispheres 70.5
2527 Male, age 74, both hemispheres 59.5
2082 Female, age 91, right hemisphere 49.8
2045 Male, age 76, both hemispheres 46.4
Hippocampus, CA2
nTPM: 73.0
1963 Male, age 80, left hemisphere 97.7
1892 Male, age 76, both hemispheres 90.6
2249 Male, age 74, both hemispheres 69.0
1940 Female, age 85, left hemisphere 65.2
2437 Female, age 94, left hemisphere 62.0
2113 Female, age 91, right hemisphere 53.6
Hippocampus, CA3
nTPM: 59.7
2137 Male, age 80, left hemisphere 81.7
1867 Male, age 76, both hemispheres 78.1
1891 Female, age 85, both hemispheres 62.4
2436 Male, age 74, both hemispheres 50.7
2620 Female, age 94, left hemisphere 47.6
2861 Female, age 67, both hemispheres 37.6
Parahippocampal cortex
nTPM: 61.2
1990 Female, age 91, right hemisphere 81.1
1850 Male, age 80, both hemispheres 77.6
1933 Female, age 85, both hemispheres 62.6
2692 Male, age 74, both hemispheres 62.4
2532 Female, age 72, left hemisphere 61.4
2250 Female, age 67, right hemisphere 60.9
2245 Female, age 91, both hemispheres 57.7
2693 Female, age 94, both hemispheres 56.5
2018 Male, age 76, both hemispheres 52.8
2622 Female, age 67, right hemisphere 38.7
Perirhinal gyrus
nTPM: 70.9
1847 Female, age 91, left hemisphere 92.1
2521 Female, age 94, right hemisphere 74.4
1794 Male, age 80, right hemisphere 71.2
1841 Female, age 85, right hemisphere 60.4
2848 Male, age 76, right hemisphere 56.7
Subiculum
nTPM: 62.9
1977 Female, age 85, both hemispheres 78.7
1901 Male, age 80, both hemispheres 73.5
2438 Female, age 94, left hemisphere 63.1
2619 Male, age 74, both hemispheres 59.4
2042 Male, age 76, both hemispheres 57.0
2729 Female, age 91, right hemisphere 45.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.8
Samples: 197

Max nTPM: 90.0
Min nTPM: 15.7
Std nTPM: 14.2
Median nTPM: 44.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 90.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 89.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 85.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 83.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 82.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 77.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 76.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 76.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 74.2
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 73.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 73.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 70.9
FF:10169-103B7 60 years, female 72.7
FF:10153-102I9 76 years, female 69.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 98.3
Pig sample Sample description nTPM
Subiculum
nTPM: 94.9
Samples: 4

Max nTPM: 122.1
Min nTPM: 80.0
Sample A Female 122.1
Sample B Female 91.0
Sample C Male 80.0
Sample D Male 86.3
Dorsal hippocampus
nTPM: 98.3
Samples: 4

Max nTPM: 120.8
Min nTPM: 77.9
Sample A Female 120.8
Sample B Female 99.1
Sample C Male 95.3
Sample D Male 77.9
Entorhinal cortex
nTPM: 94.8
Samples: 4

Max nTPM: 103.5
Min nTPM: 83.3
Sample A Female 95.4
Sample B Female 103.5
Sample C Male 97.0
Sample D Male 83.3
Ventral hippocampus
nTPM: 80.5
Samples: 4

Max nTPM: 90.6
Min nTPM: 65.9
Sample A Female 90.5
Sample B Female 65.9
Sample C Male 75.0
Sample D Male 90.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 189.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 189.6
Samples: 4

Max nTPM: 200.9
Min nTPM: 172.0
Sample A Male 193.4
Sample B Male 192.1
Sample C Female 172.0
Sample D Female 200.9
Hippocampal formation
nTPM: 183.8
Samples: 4

Max nTPM: 210.5
Min nTPM: 163.7
Sample A Male 168.2
Sample B Male 192.9
Sample C Female 210.5
Sample D Female 163.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.4
654924 Antisense, RP_040922_01_A10, Mouse strain C57BL/6J (56 days, male) 18.4
71608200 Antisense, RP_050927_01_A08, Mouse strain C57BL/6J (56 days, male) 18.4

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