MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.4 nTPM
HPA Brain:104.8 nTPM
GTEx:57.4 nTPM
FANTOM5:83.6 Scaled Tags Per Million
Pig:121.4 nTPM
Mouse:214.4 nTPM
Allen mouse:15.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 73.2
2019 Male, age 18, unknown 96.9
2411 Female, age 72, unknown 90.1
1827 Male, age 72, unknown 82.1
2219 Male, age 76, both hemispheres 79.6
2828 Female, age 72, unknown 70.9
1833 Male, age 53, unknown 68.1
1830 Male, age 51, unknown 67.7
1870 Female, age 42, unknown 66.5
2666 Male, age 74, left hemisphere 62.7
2586 Male, age 75, left hemisphere 47.1
Dorsal raphe nucleus
nTPM: 74.7
2750 Male, age 76, both hemispheres 97.1
2298 Female, age 72, unknown 89.3
2047 Male, age 72, unknown 76.3
1828 Male, age 53, unknown 63.0
2016 Female, age 72, unknown 47.8
Inferior colliculus
nTPM: 62.0
2097 Female, age 72, unknown 81.4
1890 Male, age 53, unknown 62.4
1848 Female, age 42, unknown 59.8
2849 Male, age 72, unknown 44.4
Median raphe nucleus
nTPM: 104.8
2220 Male, age 76, midline 104.8
Periaquaductal grey, anterior
nTPM: 82.4
1947 Male, age 18, unknown 84.8
2502 Female, age 75, unknown 81.4
1795 Male, age 51, unknown 81.0
Periaquaductal grey, dorsal
nTPM: 53.4
2464 Female, age 72, unknown 61.6
1831 Male, age 72, unknown 58.1
1840 Male, age 53, unknown 48.4
2850 Male, age 76, both hemispheres 45.5
Periaquaductal grey, lateral
nTPM: 54.9
2272 Male, age 74, both hemispheres 61.8
2053 Male, age 18, unknown 60.5
2140 Male, age 76, both hemispheres 42.4
Pretectal area
nTPM: 88.0
2007 Male, age 72, unknown 125.5
1816 Male, age 51, unknown 125.3
1944 Female, age 72, unknown 124.7
1817 Female, age 42, unknown 115.3
1815 Male, age 53, unknown 111.0
2667 Female, age 75, unknown 72.5
2273 Male, age 74, both hemispheres 66.3
2224 Female, age 72, unknown 63.5
2407 Male, age 75, both hemispheres 55.8
2825 Male, age 18, unknown 54.2
2316 Male, age 76, right hemisphere 54.0
Red nucleus
nTPM: 78.3
1821 Female, age 72, unknown 102.2
2725 Female, age 75, unknown 90.8
1865 Male, age 51, unknown 88.3
2785 Male, age 18, unknown 85.7
2503 Female, age 72, unknown 85.3
1904 Male, age 53, unknown 81.8
2588 Male, age 74, left hemisphere 75.1
1954 Female, age 42, unknown 73.1
2823 Male, age 76, right hemisphere 73.1
2227 Male, age 72, unknown 62.6
2769 Male, age 72, unknown 62.6
2584 Male, age 75, left hemisphere 58.9
Substantia nigra
nTPM: 92.7
1916 Female, age 42, unknown 124.1
1889 Female, age 72, unknown 108.1
1851 Male, age 51, unknown 107.3
1941 Male, age 53, unknown 104.9
2409 Female, age 72, unknown 104.5
2241 Male, age 72, unknown 101.1
2590 Female, age 75, unknown 75.4
2665 Male, age 74, both hemispheres 68.5
2583 Male, age 75, right hemisphere 68.4
2699 Male, age 18, unknown 64.8
Superior colliculus
nTPM: 77.9
2087 Female, age 72, unknown 108.0
2261 Male, age 18, unknown 94.4
2668 Female, age 75, unknown 89.9
1796 Male, age 53, unknown 79.2
2587 Male, age 74, left hemisphere 78.7
1913 Female, age 42, unknown 77.6
1895 Male, age 76, right hemisphere 76.4
1995 Male, age 72, unknown 70.7
1839 Male, age 51, unknown 54.6
2664 Male, age 75, both hemispheres 50.0
Ventral tegmental area
nTPM: 83.0
2410 Female, age 72, unknown 118.6
2218 Male, age 76, both hemispheres 103.8
1915 Female, age 42, unknown 85.3
2223 Female, age 72, unknown 71.0
2021 Male, age 53, unknown 60.4
1942 Male, age 51, unknown 58.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.4
Samples: 139

Max nTPM: 147.1
Min nTPM: 16.8
Std nTPM: 22.8
Median nTPM: 52.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 147.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 144.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 141.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 129.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 102.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 100.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 98.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 97.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 96.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 94.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 91.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.6
FF:10158-103A5 76 years, female 83.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 121.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 109.9
Samples: 4

Max nTPM: 150.6
Min nTPM: 64.0
Sample A Female 140.9
Sample B Female 84.2
Sample C Male 150.6
Sample D Male 64.0
Midbrain
nTPM: 121.5
Samples: 4

Max nTPM: 172.5
Min nTPM: 86.8
Sample A Female 110.0
Sample B Female 86.8
Sample C Male 172.5
Sample D Male 116.5
Periaqueductal gray
nTPM: 68.1
Samples: 3

Max nTPM: 80.5
Min nTPM: 59.6
Sample B Female 64.2
Sample C Male 80.5
Sample D Male 59.6
Superior colliculi
nTPM: 113.6
Samples: 4

Max nTPM: 166.7
Min nTPM: 74.8
Sample A Female 101.8
Sample B Female 74.8
Sample C Male 166.7
Sample D Male 111.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 214.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 214.5
Samples: 4

Max nTPM: 236.7
Min nTPM: 198.2
Sample A Male 198.2
Sample B Male 211.7
Sample C Female 236.7
Sample D Female 211.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.8
71608200 Antisense, RP_050927_01_A08, Mouse strain C57BL/6J (56 days, male) 16.6
654924 Antisense, RP_040922_01_A10, Mouse strain C57BL/6J (56 days, male) 15.0

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