MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.6 nTPM
HPA Brain:142.5 nTPM
GTEx:52.6 nTPM
FANTOM5:129.6 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:125.5 nTPM
Allen mouse:12.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 142.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 132.8
2586 Male, age 75, left hemisphere 161.0
2666 Male, age 74, left hemisphere 142.0
1827 Male, age 72, unknown 136.7
2828 Female, age 72, unknown 135.8
2219 Male, age 76, both hemispheres 135.2
2411 Female, age 72, unknown 133.4
2019 Male, age 18, unknown 127.5
1833 Male, age 53, unknown 121.9
1830 Male, age 51, unknown 119.3
1870 Female, age 42, unknown 115.3
Dorsal raphe nucleus
nTPM: 122.1
2047 Male, age 72, unknown 137.0
2750 Male, age 76, both hemispheres 135.9
2298 Female, age 72, unknown 127.5
1828 Male, age 53, unknown 114.8
2016 Female, age 72, unknown 95.2
Inferior colliculus
nTPM: 115.4
2849 Male, age 72, unknown 119.2
1848 Female, age 42, unknown 117.8
1890 Male, age 53, unknown 113.0
2097 Female, age 72, unknown 111.6
Median raphe nucleus
nTPM: 136.7
2220 Male, age 76, midline 136.7
Periaquaductal grey, anterior
nTPM: 142.5
1947 Male, age 18, unknown 150.0
2502 Female, age 75, unknown 142.1
1795 Male, age 51, unknown 135.4
Periaquaductal grey, dorsal
nTPM: 98.8
2464 Female, age 72, unknown 111.5
1840 Male, age 53, unknown 101.6
1831 Male, age 72, unknown 96.9
2850 Male, age 76, both hemispheres 85.1
Periaquaductal grey, lateral
nTPM: 89.5
2053 Male, age 18, unknown 92.5
2272 Male, age 74, both hemispheres 89.9
2140 Male, age 76, both hemispheres 86.2
Pretectal area
nTPM: 120.8
2007 Male, age 72, unknown 150.4
1816 Male, age 51, unknown 137.1
1817 Female, age 42, unknown 133.5
2667 Female, age 75, unknown 129.2
1815 Male, age 53, unknown 126.2
1944 Female, age 72, unknown 124.0
2407 Male, age 75, both hemispheres 122.8
2825 Male, age 18, unknown 112.0
2224 Female, age 72, unknown 111.2
2316 Male, age 76, right hemisphere 103.3
2273 Male, age 74, both hemispheres 78.9
Red nucleus
nTPM: 121.7
2584 Male, age 75, left hemisphere 152.8
2588 Male, age 74, left hemisphere 139.9
2785 Male, age 18, unknown 130.2
2769 Male, age 72, unknown 126.8
2227 Male, age 72, unknown 123.0
1821 Female, age 72, unknown 120.2
2503 Female, age 72, unknown 114.9
1904 Male, age 53, unknown 114.8
1954 Female, age 42, unknown 114.7
1865 Male, age 51, unknown 114.5
2823 Male, age 76, right hemisphere 109.9
2725 Female, age 75, unknown 98.4
Substantia nigra
nTPM: 136.0
1916 Female, age 42, unknown 186.7
1941 Male, age 53, unknown 152.8
1851 Male, age 51, unknown 152.1
2665 Male, age 74, both hemispheres 149.1
1889 Female, age 72, unknown 133.7
2583 Male, age 75, right hemisphere 131.9
2699 Male, age 18, unknown 121.3
2590 Female, age 75, unknown 119.2
2241 Male, age 72, unknown 107.2
2409 Female, age 72, unknown 105.5
Superior colliculus
nTPM: 121.5
2668 Female, age 75, unknown 153.7
1796 Male, age 53, unknown 137.1
2664 Male, age 75, both hemispheres 130.8
2261 Male, age 18, unknown 125.3
2087 Female, age 72, unknown 123.7
1895 Male, age 76, right hemisphere 122.4
1839 Male, age 51, unknown 117.1
2587 Male, age 74, left hemisphere 109.8
1913 Female, age 42, unknown 101.1
1995 Male, age 72, unknown 93.8
Ventral tegmental area
nTPM: 130.2
2410 Female, age 72, unknown 144.1
1915 Female, age 42, unknown 143.7
2218 Male, age 76, both hemispheres 135.3
1942 Male, age 51, unknown 125.7
2223 Female, age 72, unknown 120.0
2021 Male, age 53, unknown 112.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.6
Samples: 139

Max nTPM: 106.5
Min nTPM: 18.5
Std nTPM: 17.3
Median nTPM: 49.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 106.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 93.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 90.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 90.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 86.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 85.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 83.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 81.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 80.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 80.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 80.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.6
FF:10158-103A5 76 years, female 129.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.9
Samples: 4

Max nTPM: 80.3
Min nTPM: 43.7
Sample A Female 76.5
Sample B Female 43.7
Sample C Male 80.3
Sample D Male 51.2
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 85.3
Min nTPM: 51.6
Sample A Female 62.1
Sample B Female 51.6
Sample C Male 85.3
Sample D Male 76.1
Periaqueductal gray
nTPM: 50.1
Samples: 3

Max nTPM: 58.3
Min nTPM: 43.6
Sample B Female 48.3
Sample C Male 58.3
Sample D Male 43.6
Superior colliculi
nTPM: 71.0
Samples: 4

Max nTPM: 88.7
Min nTPM: 45.3
Sample A Female 71.1
Sample B Female 45.3
Sample C Male 88.7
Sample D Male 79.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 125.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 125.6
Samples: 4

Max nTPM: 131.7
Min nTPM: 120.5
Sample A Male 120.5
Sample B Male 121.3
Sample C Female 131.7
Sample D Female 128.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.5
69752065 Antisense, RP_050505_01_A07, Mouse strain C57BL/6J (56 days, male) 12.5

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