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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
14.5
nTPM
HPA Brain:
36.4
nTPM
GTEx:
14.5
nTPM
FANTOM5:
25.7
Scaled Tags Per Million
Pig:
21.3
nTPM
Mouse:
9.9
nTPM
Allen mouse:
0.2
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
36.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 32.6
2586
Male, age 75, left hemisphere
49.6
2019
Male, age 18, unknown
37.3
2828
Female, age 72, unknown
34.0
1833
Male, age 53, unknown
31.8
1870
Female, age 42, unknown
31.7
1830
Male, age 51, unknown
31.0
2666
Male, age 74, left hemisphere
30.9
2411
Female, age 72, unknown
30.3
1827
Male, age 72, unknown
27.6
2219
Male, age 76, both hemispheres
22.1
Dorsal raphe nucleus nTPM: 28.6
2750
Male, age 76, both hemispheres
32.9
1828
Male, age 53, unknown
29.4
2016
Female, age 72, unknown
29.0
2047
Male, age 72, unknown
28.9
2298
Female, age 72, unknown
22.7
Inferior colliculus nTPM: 26.5
1848
Female, age 42, unknown
30.8
1890
Male, age 53, unknown
27.8
2849
Male, age 72, unknown
25.0
2097
Female, age 72, unknown
22.2
Median raphe nucleus nTPM: 25.3
2220
Male, age 76, midline
25.3
Periaquaductal grey, anterior nTPM: 28.1
2502
Female, age 75, unknown
31.1
1795
Male, age 51, unknown
28.1
1947
Male, age 18, unknown
24.9
Periaquaductal grey, dorsal nTPM: 23.5
2464
Female, age 72, unknown
26.2
1831
Male, age 72, unknown
24.5
1840
Male, age 53, unknown
22.7
2850
Male, age 76, both hemispheres
20.6
Periaquaductal grey, lateral nTPM: 24.2
2053
Male, age 18, unknown
27.1
2140
Male, age 76, both hemispheres
22.9
2272
Male, age 74, both hemispheres
22.7
Pretectal area nTPM: 27.5
2007
Male, age 72, unknown
32.3
1817
Female, age 42, unknown
31.1
1815
Male, age 53, unknown
31.0
2407
Male, age 75, both hemispheres
29.2
1816
Male, age 51, unknown
27.2
2316
Male, age 76, right hemisphere
26.9
1944
Female, age 72, unknown
26.7
2667
Female, age 75, unknown
26.1
2825
Male, age 18, unknown
25.1
2273
Male, age 74, both hemispheres
24.2
2224
Female, age 72, unknown
22.1
Red nucleus nTPM: 36.4
2227
Male, age 72, unknown
39.2
1904
Male, age 53, unknown
38.9
2769
Male, age 72, unknown
38.5
2785
Male, age 18, unknown
38.2
2588
Male, age 74, left hemisphere
38.1
1865
Male, age 51, unknown
37.4
1954
Female, age 42, unknown
37.4
2584
Male, age 75, left hemisphere
36.0
2503
Female, age 72, unknown
34.3
2823
Male, age 76, right hemisphere
34.1
1821
Female, age 72, unknown
33.7
2725
Female, age 75, unknown
31.4
Substantia nigra nTPM: 28.6
2583
Male, age 75, right hemisphere
36.2
2665
Male, age 74, both hemispheres
33.4
2590
Female, age 75, unknown
30.6
1889
Female, age 72, unknown
29.5
1916
Female, age 42, unknown
29.2
1851
Male, age 51, unknown
28.7
2699
Male, age 18, unknown
27.4
2409
Female, age 72, unknown
24.7
1941
Male, age 53, unknown
23.9
2241
Male, age 72, unknown
22.4
Superior colliculus nTPM: 29.6
2664
Male, age 75, both hemispheres
38.8
1995
Male, age 72, unknown
31.4
1913
Female, age 42, unknown
30.8
1839
Male, age 51, unknown
30.2
2668
Female, age 75, unknown
29.6
2587
Male, age 74, left hemisphere
28.5
1796
Male, age 53, unknown
27.8
2261
Male, age 18, unknown
26.9
2087
Female, age 72, unknown
26.8
1895
Male, age 76, right hemisphere
25.2
Ventral tegmental area nTPM: 29.3
2223
Female, age 72, unknown
33.5
2410
Female, age 72, unknown
32.3
2021
Male, age 53, unknown
28.5
1942
Male, age 51, unknown
28.0
2218
Male, age 76, both hemispheres
26.9
1915
Female, age 42, unknown
26.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
14.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 14.5
Samples: 139
Max nTPM: 28.0
Min nTPM: 7.2
Std nTPM: 3.5
Median nTPM: 14.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
28.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
26.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
25.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
24.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
22.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
21.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
20.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
20.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
20.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
20.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
19.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
19.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
18.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
18.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
18.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
18.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
18.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
18.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
18.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
17.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
17.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
17.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
17.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
17.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
16.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
16.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
16.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
16.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
16.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
16.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
16.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
16.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
16.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
16.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
16.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
16.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
16.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
16.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
15.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
15.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
15.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
15.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
15.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
15.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
15.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
15.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
15.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
15.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
15.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
15.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
15.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
15.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
15.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
15.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
15.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
14.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
14.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
14.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
14.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
14.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
14.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
14.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
14.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
14.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
14.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
14.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
14.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
13.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
13.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
13.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
13.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
13.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
13.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
13.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
13.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
13.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
13.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
13.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
13.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
13.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
13.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
13.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
13.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
13.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
13.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
13.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
12.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
12.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
12.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
12.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
12.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
12.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
12.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
12.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
12.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
12.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
12.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
12.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
12.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
12.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
11.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
11.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
11.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
11.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
11.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
11.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
11.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
11.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
11.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
11.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
10.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
10.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
10.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
10.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
10.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
10.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
10.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
10.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
9.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
9.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
9.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
9.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
9.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
9.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
9.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
9.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
8.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
7.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
9.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 10.0
Samples: 4
Max nTPM: 10.5
Min nTPM: 9.4
Sample A
Male
9.5
Sample B
Male
10.4
Sample C
Female
9.4
Sample D
Female
10.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.