MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:125.8 nTPM
HPA Brain:66.8 nTPM
GTEx:125.8 nTPM
FANTOM5:104.3 Scaled Tags Per Million
Pig:18.5 nTPM
Mouse:65.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.7
2666 Male, age 74, left hemisphere 64.9
1870 Female, age 42, unknown 64.6
1830 Male, age 51, unknown 58.1
2828 Female, age 72, unknown 57.1
1833 Male, age 53, unknown 56.4
1827 Male, age 72, unknown 55.0
2019 Male, age 18, unknown 50.2
2411 Female, age 72, unknown 48.5
2586 Male, age 75, left hemisphere 47.7
2219 Male, age 76, both hemispheres 44.1
Dorsal raphe nucleus
nTPM: 53.6
2016 Female, age 72, unknown 67.8
2750 Male, age 76, both hemispheres 56.4
1828 Male, age 53, unknown 53.2
2298 Female, age 72, unknown 46.6
2047 Male, age 72, unknown 43.8
Inferior colliculus
nTPM: 47.5
2849 Male, age 72, unknown 54.2
1848 Female, age 42, unknown 50.5
1890 Male, age 53, unknown 44.4
2097 Female, age 72, unknown 41.1
Median raphe nucleus
nTPM: 53.9
2220 Male, age 76, midline 53.9
Periaquaductal grey, anterior
nTPM: 51.8
2502 Female, age 75, unknown 54.1
1947 Male, age 18, unknown 52.7
1795 Male, age 51, unknown 48.5
Periaquaductal grey, dorsal
nTPM: 54.7
2850 Male, age 76, both hemispheres 68.8
1831 Male, age 72, unknown 58.3
1840 Male, age 53, unknown 48.2
2464 Female, age 72, unknown 43.6
Periaquaductal grey, lateral
nTPM: 56.4
2053 Male, age 18, unknown 62.2
2140 Male, age 76, both hemispheres 55.8
2272 Male, age 74, both hemispheres 51.2
Pretectal area
nTPM: 51.5
1815 Male, age 53, unknown 60.6
2273 Male, age 74, both hemispheres 58.3
2224 Female, age 72, unknown 54.5
2825 Male, age 18, unknown 53.7
1816 Male, age 51, unknown 53.4
2407 Male, age 75, both hemispheres 51.9
1817 Female, age 42, unknown 51.7
1944 Female, age 72, unknown 50.1
2007 Male, age 72, unknown 49.5
2316 Male, age 76, right hemisphere 43.9
2667 Female, age 75, unknown 38.7
Red nucleus
nTPM: 66.8
2725 Female, age 75, unknown 86.5
2503 Female, age 72, unknown 84.4
1865 Male, age 51, unknown 72.7
1954 Female, age 42, unknown 72.3
1821 Female, age 72, unknown 71.0
2588 Male, age 74, left hemisphere 70.4
1904 Male, age 53, unknown 63.9
2823 Male, age 76, right hemisphere 63.6
2227 Male, age 72, unknown 61.5
2769 Male, age 72, unknown 56.6
2785 Male, age 18, unknown 54.5
2584 Male, age 75, left hemisphere 43.8
Substantia nigra
nTPM: 51.8
2409 Female, age 72, unknown 59.6
2699 Male, age 18, unknown 58.1
2665 Male, age 74, both hemispheres 55.1
1889 Female, age 72, unknown 52.7
2590 Female, age 75, unknown 52.5
1941 Male, age 53, unknown 51.2
1851 Male, age 51, unknown 49.8
1916 Female, age 42, unknown 49.6
2241 Male, age 72, unknown 48.0
2583 Male, age 75, right hemisphere 41.2
Superior colliculus
nTPM: 53.4
1995 Male, age 72, unknown 69.7
2587 Male, age 74, left hemisphere 67.2
1913 Female, age 42, unknown 63.3
1839 Male, age 51, unknown 52.1
2261 Male, age 18, unknown 51.4
1796 Male, age 53, unknown 50.2
2668 Female, age 75, unknown 49.4
2664 Male, age 75, both hemispheres 44.3
2087 Female, age 72, unknown 44.2
1895 Male, age 76, right hemisphere 42.3
Ventral tegmental area
nTPM: 54.1
2223 Female, age 72, unknown 73.3
2021 Male, age 53, unknown 55.9
2218 Male, age 76, both hemispheres 50.2
1915 Female, age 42, unknown 49.5
1942 Male, age 51, unknown 48.2
2410 Female, age 72, unknown 47.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 125.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 125.8
Samples: 139

Max nTPM: 342.1
Min nTPM: 49.9
Std nTPM: 51.5
Median nTPM: 113.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 342.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 296.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 261.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 259.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 254.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 241.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 236.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 226.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 216.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 209.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 208.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.3
FF:10158-103A5 76 years, female 104.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.0
Samples: 4

Max nTPM: 18.6
Min nTPM: 15.0
Sample A Female 18.3
Sample B Female 15.0
Sample C Male 18.6
Sample D Male 16.2
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 17.2
Sample A Female 21.7
Sample B Female 17.2
Sample C Male 17.6
Sample D Male 17.4
Periaqueductal gray
nTPM: 15.8
Samples: 3

Max nTPM: 16.3
Min nTPM: 15.1
Sample B Female 15.1
Sample C Male 15.9
Sample D Male 16.3
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 18.6
Min nTPM: 13.0
Sample A Female 18.5
Sample B Female 13.0
Sample C Male 18.5
Sample D Male 18.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 65.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.6
Samples: 4

Max nTPM: 68.5
Min nTPM: 63.3
Sample A Male 68.5
Sample B Male 64.8
Sample C Female 65.9
Sample D Female 63.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68862150 Antisense, RP_050301_01_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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