MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA Brain:79.3 nTPM
GTEx:17.0 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:21.8 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.2
1830 Male, age 51, unknown 80.3
1833 Male, age 53, unknown 78.6
2019 Male, age 18, unknown 78.5
1870 Female, age 42, unknown 75.8
2666 Male, age 74, left hemisphere 71.9
2411 Female, age 72, unknown 70.5
2828 Female, age 72, unknown 69.7
2219 Male, age 76, both hemispheres 67.6
1827 Male, age 72, unknown 67.5
2586 Male, age 75, left hemisphere 51.8
Dorsal raphe nucleus
nTPM: 72.4
2016 Female, age 72, unknown 85.4
1828 Male, age 53, unknown 73.5
2047 Male, age 72, unknown 69.7
2750 Male, age 76, both hemispheres 69.6
2298 Female, age 72, unknown 64.0
Inferior colliculus
nTPM: 72.2
1890 Male, age 53, unknown 78.8
2097 Female, age 72, unknown 72.3
2849 Male, age 72, unknown 70.5
1848 Female, age 42, unknown 67.0
Median raphe nucleus
nTPM: 69.9
2220 Male, age 76, midline 69.9
Periaquaductal grey, anterior
nTPM: 64.4
1947 Male, age 18, unknown 68.5
2502 Female, age 75, unknown 64.2
1795 Male, age 51, unknown 60.5
Periaquaductal grey, dorsal
nTPM: 79.3
2850 Male, age 76, both hemispheres 92.0
1831 Male, age 72, unknown 84.4
2464 Female, age 72, unknown 73.8
1840 Male, age 53, unknown 67.0
Periaquaductal grey, lateral
nTPM: 78.4
2140 Male, age 76, both hemispheres 86.4
2272 Male, age 74, both hemispheres 76.5
2053 Male, age 18, unknown 72.3
Pretectal area
nTPM: 70.3
2316 Male, age 76, right hemisphere 75.6
2273 Male, age 74, both hemispheres 75.3
1815 Male, age 53, unknown 75.0
2407 Male, age 75, both hemispheres 71.4
2667 Female, age 75, unknown 71.1
2224 Female, age 72, unknown 70.8
1944 Female, age 72, unknown 70.3
2007 Male, age 72, unknown 67.8
1817 Female, age 42, unknown 66.7
2825 Male, age 18, unknown 64.9
1816 Male, age 51, unknown 64.0
Red nucleus
nTPM: 77.6
2823 Male, age 76, right hemisphere 89.9
1865 Male, age 51, unknown 84.2
1954 Female, age 42, unknown 83.4
2503 Female, age 72, unknown 80.3
1904 Male, age 53, unknown 79.4
1821 Female, age 72, unknown 77.1
2588 Male, age 74, left hemisphere 75.4
2227 Male, age 72, unknown 74.9
2785 Male, age 18, unknown 74.7
2725 Female, age 75, unknown 73.5
2769 Male, age 72, unknown 72.6
2584 Male, age 75, left hemisphere 65.9
Substantia nigra
nTPM: 71.8
2699 Male, age 18, unknown 80.4
2409 Female, age 72, unknown 77.6
2590 Female, age 75, unknown 76.1
2665 Male, age 74, both hemispheres 73.1
2241 Male, age 72, unknown 73.0
2583 Male, age 75, right hemisphere 72.7
1941 Male, age 53, unknown 69.8
1889 Female, age 72, unknown 67.8
1851 Male, age 51, unknown 65.0
1916 Female, age 42, unknown 63.0
Superior colliculus
nTPM: 71.1
1995 Male, age 72, unknown 81.7
1913 Female, age 42, unknown 81.1
2587 Male, age 74, left hemisphere 75.7
1895 Male, age 76, right hemisphere 75.0
1839 Male, age 51, unknown 74.6
2668 Female, age 75, unknown 69.4
2087 Female, age 72, unknown 68.0
2261 Male, age 18, unknown 64.6
1796 Male, age 53, unknown 60.6
2664 Male, age 75, both hemispheres 60.6
Ventral tegmental area
nTPM: 68.1
2223 Female, age 72, unknown 71.6
2021 Male, age 53, unknown 70.5
2218 Male, age 76, both hemispheres 68.3
2410 Female, age 72, unknown 67.3
1942 Male, age 51, unknown 67.0
1915 Female, age 42, unknown 63.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 17.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.0
Samples: 139

Max nTPM: 28.0
Min nTPM: 11.8
Std nTPM: 3.0
Median nTPM: 16.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 26.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 25.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 24.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 23.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 23.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 22.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 22.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 22.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 21.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.3
FF:10158-103A5 76 years, female 55.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.1
Samples: 4

Max nTPM: 36.1
Min nTPM: 27.3
Sample A Female 27.3
Sample B Female 32.6
Sample C Male 28.3
Sample D Male 36.1
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 40.6
Min nTPM: 24.0
Sample A Female 40.6
Sample B Female 32.6
Sample C Male 25.8
Sample D Male 24.0
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 30.3
Min nTPM: 27.5
Sample B Female 29.5
Sample C Male 27.5
Sample D Male 30.3
Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 32.6
Min nTPM: 27.8
Sample A Female 27.8
Sample B Female 32.6
Sample C Male 28.2
Sample D Male 29.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 19.2
Sample A Male 19.2
Sample B Male 23.3
Sample C Female 23.4
Sample D Female 21.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
77799019 Antisense, RP_070212_03_C05, Mouse strain C57BL/6J (56 days, male) 0.3

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