MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.3 nTPM
HPA Brain:60.4 nTPM
GTEx:26.3 nTPM
FANTOM5:79.9 Scaled Tags Per Million
Pig:53.9 nTPM
Mouse:123.9 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.3
2586 Male, age 75, left hemisphere 68.0
2666 Male, age 74, left hemisphere 57.1
1827 Male, age 72, unknown 55.8
2019 Male, age 18, unknown 53.3
2828 Female, age 72, unknown 52.8
1833 Male, age 53, unknown 52.5
1870 Female, age 42, unknown 49.2
2411 Female, age 72, unknown 49.2
1830 Male, age 51, unknown 47.8
2219 Male, age 76, both hemispheres 46.9
Dorsal raphe nucleus
nTPM: 52.4
1828 Male, age 53, unknown 55.5
2047 Male, age 72, unknown 54.5
2016 Female, age 72, unknown 53.1
2298 Female, age 72, unknown 52.3
2750 Male, age 76, both hemispheres 46.6
Inferior colliculus
nTPM: 51.8
2849 Male, age 72, unknown 57.1
1848 Female, age 42, unknown 51.6
1890 Male, age 53, unknown 50.7
2097 Female, age 72, unknown 47.8
Median raphe nucleus
nTPM: 48.8
2220 Male, age 76, midline 48.8
Periaquaductal grey, anterior
nTPM: 54.8
2502 Female, age 75, unknown 55.0
1795 Male, age 51, unknown 54.9
1947 Male, age 18, unknown 54.4
Periaquaductal grey, dorsal
nTPM: 54.6
2850 Male, age 76, both hemispheres 59.0
1840 Male, age 53, unknown 56.1
1831 Male, age 72, unknown 52.8
2464 Female, age 72, unknown 50.4
Periaquaductal grey, lateral
nTPM: 53.3
2140 Male, age 76, both hemispheres 55.9
2272 Male, age 74, both hemispheres 52.7
2053 Male, age 18, unknown 51.4
Pretectal area
nTPM: 56.7
1816 Male, age 51, unknown 65.1
1817 Female, age 42, unknown 63.4
1944 Female, age 72, unknown 60.1
2007 Male, age 72, unknown 58.9
1815 Male, age 53, unknown 58.5
2667 Female, age 75, unknown 55.3
2407 Male, age 75, both hemispheres 54.5
2825 Male, age 18, unknown 54.2
2316 Male, age 76, right hemisphere 53.3
2224 Female, age 72, unknown 50.8
2273 Male, age 74, both hemispheres 49.3
Red nucleus
nTPM: 52.4
2588 Male, age 74, left hemisphere 55.7
2584 Male, age 75, left hemisphere 54.5
1821 Female, age 72, unknown 54.1
2785 Male, age 18, unknown 54.1
2725 Female, age 75, unknown 52.8
1904 Male, age 53, unknown 52.7
1865 Male, age 51, unknown 52.1
2227 Male, age 72, unknown 51.8
1954 Female, age 42, unknown 51.0
2823 Male, age 76, right hemisphere 50.4
2503 Female, age 72, unknown 49.9
2769 Male, age 72, unknown 49.3
Substantia nigra
nTPM: 60.4
1916 Female, age 42, unknown 71.7
2665 Male, age 74, both hemispheres 64.8
1851 Male, age 51, unknown 63.1
2583 Male, age 75, right hemisphere 61.8
2699 Male, age 18, unknown 59.7
2241 Male, age 72, unknown 58.9
1941 Male, age 53, unknown 56.7
1889 Female, age 72, unknown 56.6
2590 Female, age 75, unknown 55.6
2409 Female, age 72, unknown 54.9
Superior colliculus
nTPM: 55.4
2664 Male, age 75, both hemispheres 69.4
2668 Female, age 75, unknown 60.1
2261 Male, age 18, unknown 58.1
2087 Female, age 72, unknown 56.3
1796 Male, age 53, unknown 55.2
2587 Male, age 74, left hemisphere 52.4
1895 Male, age 76, right hemisphere 51.7
1913 Female, age 42, unknown 51.3
1839 Male, age 51, unknown 50.2
1995 Male, age 72, unknown 49.3
Ventral tegmental area
nTPM: 55.5
2218 Male, age 76, both hemispheres 57.3
1915 Female, age 42, unknown 56.7
1942 Male, age 51, unknown 56.0
2410 Female, age 72, unknown 55.3
2223 Female, age 72, unknown 54.4
2021 Male, age 53, unknown 53.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.3
Samples: 139

Max nTPM: 41.7
Min nTPM: 12.0
Std nTPM: 3.9
Median nTPM: 26.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 41.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 37.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 37.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 33.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 32.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 32.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 32.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 31.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 31.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.9
FF:10158-103A5 76 years, female 79.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 53.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.6
Samples: 4

Max nTPM: 60.3
Min nTPM: 44.7
Sample A Female 60.3
Sample B Female 44.7
Sample C Male 58.3
Sample D Male 47.2
Midbrain
nTPM: 53.9
Samples: 4

Max nTPM: 65.3
Min nTPM: 47.3
Sample A Female 65.3
Sample B Female 47.3
Sample C Male 52.0
Sample D Male 50.8
Periaqueductal gray
nTPM: 48.1
Samples: 3

Max nTPM: 52.5
Min nTPM: 44.8
Sample B Female 47.0
Sample C Male 52.5
Sample D Male 44.8
Superior colliculi
nTPM: 51.1
Samples: 4

Max nTPM: 55.2
Min nTPM: 43.6
Sample A Female 55.2
Sample B Female 43.6
Sample C Male 50.4
Sample D Male 55.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.9
Samples: 4

Max nTPM: 126.1
Min nTPM: 122.4
Sample A Male 122.4
Sample B Male 126.1
Sample C Female 123.3
Sample D Female 123.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
100146071 Antisense, RP_110421_02_F09, Mouse strain C57BL/6J (56 days, male) 4.6

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