MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.6 nTPM
HPA Brain:110.7 nTPM
GTEx:62.6 nTPM
FANTOM5:101.0 Scaled Tags Per Million
Pig:38.9 nTPM
Mouse:35.2 nTPM
Allen mouse:6.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.5
2586 Male, age 75, left hemisphere 118.6
1870 Female, age 42, unknown 99.4
2828 Female, age 72, unknown 97.0
1827 Male, age 72, unknown 93.1
2411 Female, age 72, unknown 90.0
1833 Male, age 53, unknown 81.4
2019 Male, age 18, unknown 72.7
2666 Male, age 74, left hemisphere 69.4
1830 Male, age 51, unknown 69.2
2219 Male, age 76, both hemispheres 54.5
Dorsal raphe nucleus
nTPM: 82.7
2750 Male, age 76, both hemispheres 102.7
2298 Female, age 72, unknown 89.4
2016 Female, age 72, unknown 81.3
1828 Male, age 53, unknown 72.8
2047 Male, age 72, unknown 67.3
Inferior colliculus
nTPM: 65.4
2097 Female, age 72, unknown 69.9
1848 Female, age 42, unknown 67.1
1890 Male, age 53, unknown 67.0
2849 Male, age 72, unknown 57.6
Median raphe nucleus
nTPM: 69.4
2220 Male, age 76, midline 69.4
Periaquaductal grey, anterior
nTPM: 110.7
1795 Male, age 51, unknown 117.4
1947 Male, age 18, unknown 110.3
2502 Female, age 75, unknown 104.3
Periaquaductal grey, dorsal
nTPM: 69.6
2464 Female, age 72, unknown 79.9
1831 Male, age 72, unknown 74.4
1840 Male, age 53, unknown 65.7
2850 Male, age 76, both hemispheres 58.4
Periaquaductal grey, lateral
nTPM: 78.3
2272 Male, age 74, both hemispheres 88.7
2053 Male, age 18, unknown 80.1
2140 Male, age 76, both hemispheres 66.1
Pretectal area
nTPM: 91.5
1816 Male, age 51, unknown 133.5
1944 Female, age 72, unknown 115.2
2273 Male, age 74, both hemispheres 99.1
2007 Male, age 72, unknown 94.4
2667 Female, age 75, unknown 88.0
1815 Male, age 53, unknown 86.2
1817 Female, age 42, unknown 85.0
2224 Female, age 72, unknown 79.9
2825 Male, age 18, unknown 77.1
2316 Male, age 76, right hemisphere 76.9
2407 Male, age 75, both hemispheres 71.3
Red nucleus
nTPM: 83.2
1904 Male, age 53, unknown 97.4
2769 Male, age 72, unknown 94.6
2227 Male, age 72, unknown 89.8
2503 Female, age 72, unknown 88.3
2785 Male, age 18, unknown 83.7
1954 Female, age 42, unknown 82.6
2725 Female, age 75, unknown 80.6
2588 Male, age 74, left hemisphere 79.7
2823 Male, age 76, right hemisphere 78.2
1821 Female, age 72, unknown 77.7
1865 Male, age 51, unknown 74.8
2584 Male, age 75, left hemisphere 71.4
Substantia nigra
nTPM: 72.1
2590 Female, age 75, unknown 94.9
2583 Male, age 75, right hemisphere 94.8
2665 Male, age 74, both hemispheres 78.7
1851 Male, age 51, unknown 78.4
1889 Female, age 72, unknown 74.2
1916 Female, age 42, unknown 73.2
1941 Male, age 53, unknown 62.8
2699 Male, age 18, unknown 59.5
2409 Female, age 72, unknown 53.0
2241 Male, age 72, unknown 52.0
Superior colliculus
nTPM: 90.0
2261 Male, age 18, unknown 131.9
1913 Female, age 42, unknown 111.1
2087 Female, age 72, unknown 109.8
1995 Male, age 72, unknown 103.4
1796 Male, age 53, unknown 97.1
2587 Male, age 74, left hemisphere 83.7
2668 Female, age 75, unknown 72.3
2664 Male, age 75, both hemispheres 66.0
1839 Male, age 51, unknown 62.9
1895 Male, age 76, right hemisphere 61.2
Ventral tegmental area
nTPM: 77.2
2223 Female, age 72, unknown 89.8
1942 Male, age 51, unknown 80.3
2021 Male, age 53, unknown 80.3
2410 Female, age 72, unknown 78.7
1915 Female, age 42, unknown 69.2
2218 Male, age 76, both hemispheres 64.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.6
Samples: 139

Max nTPM: 140.7
Min nTPM: 29.4
Std nTPM: 19.4
Median nTPM: 58.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 140.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 113.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 112.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 107.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 106.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 104.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 104.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 104.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 101.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 99.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 95.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.0
FF:10158-103A5 76 years, female 101.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.2
Samples: 4

Max nTPM: 44.4
Min nTPM: 28.6
Sample A Female 44.4
Sample B Female 30.7
Sample C Male 41.2
Sample D Male 28.6
Midbrain
nTPM: 38.9
Samples: 4

Max nTPM: 57.0
Min nTPM: 28.4
Sample A Female 57.0
Sample B Female 28.4
Sample C Male 39.5
Sample D Male 30.8
Periaqueductal gray
nTPM: 34.3
Samples: 3

Max nTPM: 43.1
Min nTPM: 29.1
Sample B Female 30.8
Sample C Male 43.1
Sample D Male 29.1
Superior colliculi
nTPM: 35.4
Samples: 4

Max nTPM: 45.3
Min nTPM: 27.1
Sample A Female 40.2
Sample B Female 45.3
Sample C Male 28.8
Sample D Male 27.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.2
Samples: 4

Max nTPM: 37.0
Min nTPM: 33.6
Sample A Male 37.0
Sample B Male 33.6
Sample C Female 34.1
Sample D Female 36.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.1
68341860 Antisense, RP_041207_02_C12, Mouse strain C57BL/6J (56 days, male) 9.3
795 Antisense, RP_Baylor_102958, Mouse strain C57BL/6J (56 days, male) 2.9

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