HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.3 nTPM
HPA Brain:59.5 nTPM
GTEx:44.3 nTPM
FANTOM5:66.8 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:43.9 nTPM
Allen mouse:6.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 59.5
Sample id Sample description nTPM
Hippocampus
nTPM: 54.6
1898 Male, age 80, left hemisphere 58.9
2621 Female, age 67, right hemisphere 58.5
1855 Male, age 76, left hemisphere 55.8
2148 Female, age 91, left hemisphere 54.2
2529 Female, age 94, left hemisphere 52.3
1911 Female, age 85, right hemisphere 48.0
Dentate gyrus
nTPM: 52.2
2530 Female, age 94, left hemisphere 64.8
1927 Female, age 91, both hemispheres 54.9
2010 Male, age 76, both hemispheres 51.0
2246 Female, age 85, both hemispheres 49.7
2528 Male, age 74, both hemispheres 47.1
2531 Female, age 67, both hemispheres 45.5
Entorhinal gyrus
nTPM: 58.0
2613 Female, age 94, left hemisphere 71.2
2764 Male, age 80, right hemisphere 62.4
1787 Male, age 76, left hemisphere 61.1
1938 Female, age 85, left hemisphere 55.5
2117 Female, age 91, right hemisphere 49.6
2686 Male, age 75, right hemisphere 48.4
Hippocampus, CA1
nTPM: 57.6
2749 Male, age 80, left hemisphere 90.4
2527 Male, age 74, both hemispheres 56.3
1873 Female, age 85, both hemispheres 51.5
2082 Female, age 91, right hemisphere 48.3
2045 Male, age 76, both hemispheres 41.6
Hippocampus, CA2
nTPM: 55.3
1963 Male, age 80, left hemisphere 63.9
1892 Male, age 76, both hemispheres 61.9
2437 Female, age 94, left hemisphere 58.9
2249 Male, age 74, both hemispheres 49.7
1940 Female, age 85, left hemisphere 49.2
2113 Female, age 91, right hemisphere 47.8
Hippocampus, CA3
nTPM: 56.9
2137 Male, age 80, left hemisphere 76.7
2436 Male, age 74, both hemispheres 56.6
1867 Male, age 76, both hemispheres 56.5
2861 Female, age 67, both hemispheres 55.6
2620 Female, age 94, left hemisphere 53.5
1891 Female, age 85, both hemispheres 42.8
Parahippocampal cortex
nTPM: 53.9
2245 Female, age 91, both hemispheres 64.2
2532 Female, age 72, left hemisphere 59.9
1850 Male, age 80, both hemispheres 55.7
1933 Female, age 85, both hemispheres 54.4
1990 Female, age 91, right hemisphere 53.6
2250 Female, age 67, right hemisphere 52.5
2693 Female, age 94, both hemispheres 52.2
2622 Female, age 67, right hemisphere 50.2
2692 Male, age 74, both hemispheres 48.4
2018 Male, age 76, both hemispheres 47.8
Perirhinal gyrus
nTPM: 59.5
1847 Female, age 91, left hemisphere 66.7
1794 Male, age 80, right hemisphere 64.9
2521 Female, age 94, right hemisphere 63.0
1841 Female, age 85, right hemisphere 55.0
2848 Male, age 76, right hemisphere 47.6
Subiculum
nTPM: 53.5
2438 Female, age 94, left hemisphere 61.8
1901 Male, age 80, both hemispheres 59.5
1977 Female, age 85, both hemispheres 56.5
2619 Male, age 74, both hemispheres 54.2
2042 Male, age 76, both hemispheres 48.0
2729 Female, age 91, right hemisphere 40.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 44.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 44.3
Samples: 197

Max nTPM: 97.0
Min nTPM: 17.7
Std nTPM: 11.3
Median nTPM: 43.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 97.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 81.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 79.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 69.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 68.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 66.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 62.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 62.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 62.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 61.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 61.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.8
FF:10169-103B7 60 years, female 76.8
FF:10153-102I9 76 years, female 56.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.4
Pig sample Sample description nTPM
Subiculum
nTPM: 16.4
Samples: 4

Max nTPM: 20.0
Min nTPM: 14.3
Sample A Female 20.0
Sample B Female 14.5
Sample C Male 16.9
Sample D Male 14.3
Dorsal hippocampus
nTPM: 17.0
Samples: 4

Max nTPM: 20.8
Min nTPM: 13.1
Sample A Female 20.8
Sample B Female 17.1
Sample C Male 16.9
Sample D Male 13.1
Entorhinal cortex
nTPM: 16.3
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.3
Sample A Female 17.6
Sample B Female 16.1
Sample C Male 17.2
Sample D Male 14.3
Ventral hippocampus
nTPM: 17.4
Samples: 4

Max nTPM: 23.2
Min nTPM: 11.8
Sample A Female 16.9
Sample B Female 11.8
Sample C Male 23.2
Sample D Male 17.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 43.9
Samples: 4

Max nTPM: 47.1
Min nTPM: 40.2
Sample A Male 40.2
Sample B Male 44.6
Sample C Female 47.1
Sample D Female 43.5
Hippocampal formation
nTPM: 38.7
Samples: 4

Max nTPM: 41.2
Min nTPM: 36.3
Sample A Male 39.3
Sample B Male 36.3
Sample C Female 37.9
Sample D Female 41.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.4
68563080 Antisense, RP_050125_01_A12, Mouse strain C57BL/6J (56 days, male) 6.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org