MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.2 nTPM
HPA Brain:53.5 nTPM
GTEx:37.2 nTPM
FANTOM5:49.3 Scaled Tags Per Million
Pig:20.4 nTPM
Mouse:47.5 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.1
2586 Male, age 75, left hemisphere 72.1
2019 Male, age 18, unknown 59.7
1827 Male, age 72, unknown 52.9
2666 Male, age 74, left hemisphere 50.3
2828 Female, age 72, unknown 49.3
2219 Male, age 76, both hemispheres 46.7
2411 Female, age 72, unknown 46.5
1833 Male, age 53, unknown 41.5
1870 Female, age 42, unknown 41.4
1830 Male, age 51, unknown 40.9
Dorsal raphe nucleus
nTPM: 44.0
1828 Male, age 53, unknown 47.1
2047 Male, age 72, unknown 46.5
2298 Female, age 72, unknown 45.5
2750 Male, age 76, both hemispheres 42.7
2016 Female, age 72, unknown 38.3
Inferior colliculus
nTPM: 43.3
2097 Female, age 72, unknown 45.2
2849 Male, age 72, unknown 42.9
1848 Female, age 42, unknown 42.6
1890 Male, age 53, unknown 42.5
Median raphe nucleus
nTPM: 45.0
2220 Male, age 76, midline 45.0
Periaquaductal grey, anterior
nTPM: 50.9
2502 Female, age 75, unknown 55.0
1795 Male, age 51, unknown 50.8
1947 Male, age 18, unknown 46.8
Periaquaductal grey, dorsal
nTPM: 39.5
1840 Male, age 53, unknown 41.3
2464 Female, age 72, unknown 40.4
1831 Male, age 72, unknown 39.9
2850 Male, age 76, both hemispheres 36.4
Periaquaductal grey, lateral
nTPM: 38.8
2272 Male, age 74, both hemispheres 40.3
2140 Male, age 76, both hemispheres 38.5
2053 Male, age 18, unknown 37.6
Pretectal area
nTPM: 51.7
2007 Male, age 72, unknown 65.6
1816 Male, age 51, unknown 64.5
1817 Female, age 42, unknown 63.9
1944 Female, age 72, unknown 57.6
1815 Male, age 53, unknown 54.6
2407 Male, age 75, both hemispheres 51.0
2667 Female, age 75, unknown 49.5
2316 Male, age 76, right hemisphere 41.6
2224 Female, age 72, unknown 40.4
2273 Male, age 74, both hemispheres 39.8
2825 Male, age 18, unknown 39.8
Red nucleus
nTPM: 47.8
2785 Male, age 18, unknown 56.9
2584 Male, age 75, left hemisphere 54.5
2503 Female, age 72, unknown 49.4
2588 Male, age 74, left hemisphere 47.8
1821 Female, age 72, unknown 47.2
1904 Male, age 53, unknown 46.9
1954 Female, age 42, unknown 46.6
2227 Male, age 72, unknown 46.3
1865 Male, age 51, unknown 46.1
2725 Female, age 75, unknown 46.1
2769 Male, age 72, unknown 45.1
2823 Male, age 76, right hemisphere 41.3
Substantia nigra
nTPM: 53.5
1916 Female, age 42, unknown 73.9
1851 Male, age 51, unknown 60.0
2665 Male, age 74, both hemispheres 59.1
1941 Male, age 53, unknown 58.0
1889 Female, age 72, unknown 55.4
2583 Male, age 75, right hemisphere 49.5
2590 Female, age 75, unknown 47.2
2699 Male, age 18, unknown 46.9
2241 Male, age 72, unknown 44.6
2409 Female, age 72, unknown 40.4
Superior colliculus
nTPM: 48.4
2664 Male, age 75, both hemispheres 56.1
2087 Female, age 72, unknown 53.8
1796 Male, age 53, unknown 53.7
2261 Male, age 18, unknown 53.6
2668 Female, age 75, unknown 52.6
1895 Male, age 76, right hemisphere 45.5
1839 Male, age 51, unknown 42.5
1913 Female, age 42, unknown 42.3
1995 Male, age 72, unknown 42.0
2587 Male, age 74, left hemisphere 41.8
Ventral tegmental area
nTPM: 48.2
2410 Female, age 72, unknown 55.6
1915 Female, age 42, unknown 52.6
2218 Male, age 76, both hemispheres 51.3
1942 Male, age 51, unknown 46.6
2223 Female, age 72, unknown 43.4
2021 Male, age 53, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.2
Samples: 139

Max nTPM: 65.1
Min nTPM: 23.4
Std nTPM: 7.2
Median nTPM: 36.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 65.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 55.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 54.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 53.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 51.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.0
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 50.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 50.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 49.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 49.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.3
FF:10158-103A5 76 years, female 49.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 23.7
Min nTPM: 15.8
Sample A Female 20.8
Sample B Female 16.8
Sample C Male 23.7
Sample D Male 15.8
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 24.8
Min nTPM: 14.1
Sample A Female 18.5
Sample B Female 14.1
Sample C Male 24.8
Sample D Male 15.9
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 17.1
Min nTPM: 13.4
Sample B Female 14.3
Sample C Male 17.1
Sample D Male 13.4
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 23.1
Min nTPM: 17.1
Sample A Female 18.7
Sample B Female 23.1
Sample C Male 22.7
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 47.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.5
Samples: 4

Max nTPM: 51.7
Min nTPM: 45.0
Sample A Male 48.2
Sample B Male 45.0
Sample C Female 45.0
Sample D Female 51.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
68563080 Antisense, RP_050125_01_A12, Mouse strain C57BL/6J (56 days, male) 5.3

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