MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1921.6 nTPM
HPA Brain:747.5 nTPM
GTEx:1921.6 nTPM
FANTOM5:219.8 Scaled Tags Per Million
Pig:307.2 nTPM
Mouse:775.6 nTPM
Allen mouse:10.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 747.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 660.2
2666 Male, age 74, left hemisphere 756.0
1870 Female, age 42, unknown 734.8
2828 Female, age 72, unknown 718.6
2586 Male, age 75, left hemisphere 677.3
1833 Male, age 53, unknown 662.6
1830 Male, age 51, unknown 635.7
1827 Male, age 72, unknown 625.3
2411 Female, age 72, unknown 608.3
2219 Male, age 76, both hemispheres 599.3
2019 Male, age 18, unknown 584.3
Dorsal raphe nucleus
nTPM: 673.3
2016 Female, age 72, unknown 743.1
2298 Female, age 72, unknown 716.9
1828 Male, age 53, unknown 679.7
2750 Male, age 76, both hemispheres 662.4
2047 Male, age 72, unknown 564.5
Inferior colliculus
nTPM: 664.7
2849 Male, age 72, unknown 711.2
1890 Male, age 53, unknown 683.7
2097 Female, age 72, unknown 648.7
1848 Female, age 42, unknown 615.1
Median raphe nucleus
nTPM: 639.4
2220 Male, age 76, midline 639.4
Periaquaductal grey, anterior
nTPM: 664.0
2502 Female, age 75, unknown 758.9
1795 Male, age 51, unknown 622.8
1947 Male, age 18, unknown 610.3
Periaquaductal grey, dorsal
nTPM: 676.0
2850 Male, age 76, both hemispheres 736.3
1840 Male, age 53, unknown 706.3
1831 Male, age 72, unknown 676.9
2464 Female, age 72, unknown 584.8
Periaquaductal grey, lateral
nTPM: 655.0
2140 Male, age 76, both hemispheres 696.0
2053 Male, age 18, unknown 669.1
2272 Male, age 74, both hemispheres 599.9
Pretectal area
nTPM: 637.6
2316 Male, age 76, right hemisphere 707.9
2825 Male, age 18, unknown 681.3
2224 Female, age 72, unknown 659.0
1817 Female, age 42, unknown 652.9
1815 Male, age 53, unknown 647.1
2007 Male, age 72, unknown 641.9
2667 Female, age 75, unknown 621.3
2407 Male, age 75, both hemispheres 616.7
2273 Male, age 74, both hemispheres 602.4
1944 Female, age 72, unknown 600.8
1816 Male, age 51, unknown 582.2
Red nucleus
nTPM: 701.4
2503 Female, age 72, unknown 843.9
1865 Male, age 51, unknown 776.9
1821 Female, age 72, unknown 752.7
1904 Male, age 53, unknown 751.6
2227 Male, age 72, unknown 728.1
2769 Male, age 72, unknown 720.1
2584 Male, age 75, left hemisphere 658.8
2785 Male, age 18, unknown 653.9
2725 Female, age 75, unknown 653.2
1954 Female, age 42, unknown 633.8
2588 Male, age 74, left hemisphere 632.7
2823 Male, age 76, right hemisphere 611.5
Substantia nigra
nTPM: 747.5
2699 Male, age 18, unknown 1010.7
1851 Male, age 51, unknown 903.8
2665 Male, age 74, both hemispheres 874.8
1916 Female, age 42, unknown 799.8
2409 Female, age 72, unknown 761.9
1889 Female, age 72, unknown 689.8
2241 Male, age 72, unknown 666.3
2590 Female, age 75, unknown 638.8
1941 Male, age 53, unknown 594.0
2583 Male, age 75, right hemisphere 535.4
Superior colliculus
nTPM: 703.9
2587 Male, age 74, left hemisphere 845.3
1913 Female, age 42, unknown 825.2
1995 Male, age 72, unknown 821.6
2668 Female, age 75, unknown 763.9
1796 Male, age 53, unknown 687.3
2664 Male, age 75, both hemispheres 680.2
1839 Male, age 51, unknown 654.3
2261 Male, age 18, unknown 601.4
2087 Female, age 72, unknown 589.0
1895 Male, age 76, right hemisphere 570.8
Ventral tegmental area
nTPM: 732.0
1915 Female, age 42, unknown 841.0
2223 Female, age 72, unknown 785.8
2021 Male, age 53, unknown 756.8
1942 Male, age 51, unknown 680.6
2410 Female, age 72, unknown 675.7
2218 Male, age 76, both hemispheres 652.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1921.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1921.6
Samples: 139

Max nTPM: 6036.3
Min nTPM: 663.4
Std nTPM: 756.1
Median nTPM: 1822.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6036.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 4597.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 4566.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 4437.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 3480.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 3205.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 3067.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 3054.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 2949.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 2859.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 2839.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.8
FF:10158-103A5 76 years, female 219.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 307.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 307.2
Samples: 4

Max nTPM: 381.0
Min nTPM: 250.6
Sample A Female 381.0
Sample B Female 320.3
Sample C Male 250.6
Sample D Male 276.7
Midbrain
nTPM: 286.1
Samples: 4

Max nTPM: 461.7
Min nTPM: 181.8
Sample A Female 461.7
Sample B Female 294.8
Sample C Male 205.9
Sample D Male 181.8
Periaqueductal gray
nTPM: 244.9
Samples: 3

Max nTPM: 269.3
Min nTPM: 226.1
Sample B Female 226.1
Sample C Male 269.3
Sample D Male 239.3
Superior colliculi
nTPM: 306.8
Samples: 4

Max nTPM: 364.8
Min nTPM: 247.4
Sample A Female 364.8
Sample B Female 346.9
Sample C Male 247.4
Sample D Male 268.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 775.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 775.6
Samples: 4

Max nTPM: 859.4
Min nTPM: 705.3
Sample A Male 859.4
Sample B Male 745.5
Sample C Female 705.3
Sample D Female 792.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
100143572 Antisense, RP_110407_01_F09, Mouse strain C57BL/6J (56 days, male) 10.4

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