MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:251.3 nTPM
HPA Brain:179.2 nTPM
GTEx:251.3 nTPM
FANTOM5:210.0 Scaled Tags Per Million
Pig:236.1 nTPM
Mouse:115.5 nTPM
Allen mouse:4.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 179.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 137.6
2019 Male, age 18, unknown 176.0
2411 Female, age 72, unknown 158.3
1827 Male, age 72, unknown 158.2
1870 Female, age 42, unknown 139.9
2828 Female, age 72, unknown 138.2
2219 Male, age 76, both hemispheres 137.7
1830 Male, age 51, unknown 124.9
1833 Male, age 53, unknown 121.1
2666 Male, age 74, left hemisphere 118.6
2586 Male, age 75, left hemisphere 103.4
Dorsal raphe nucleus
nTPM: 157.6
2298 Female, age 72, unknown 195.8
2750 Male, age 76, both hemispheres 163.3
1828 Male, age 53, unknown 161.5
2047 Male, age 72, unknown 155.2
2016 Female, age 72, unknown 112.3
Inferior colliculus
nTPM: 129.4
2097 Female, age 72, unknown 148.9
1890 Male, age 53, unknown 144.3
1848 Female, age 42, unknown 125.2
2849 Male, age 72, unknown 99.2
Median raphe nucleus
nTPM: 158.5
2220 Male, age 76, midline 158.5
Periaquaductal grey, anterior
nTPM: 135.1
1795 Male, age 51, unknown 141.1
2502 Female, age 75, unknown 132.2
1947 Male, age 18, unknown 132.0
Periaquaductal grey, dorsal
nTPM: 122.0
2850 Male, age 76, both hemispheres 127.0
2464 Female, age 72, unknown 126.5
1831 Male, age 72, unknown 119.9
1840 Male, age 53, unknown 114.7
Periaquaductal grey, lateral
nTPM: 128.9
2272 Male, age 74, both hemispheres 146.8
2053 Male, age 18, unknown 136.6
2140 Male, age 76, both hemispheres 103.2
Pretectal area
nTPM: 163.3
1816 Male, age 51, unknown 199.5
1944 Female, age 72, unknown 198.5
2007 Male, age 72, unknown 197.6
1817 Female, age 42, unknown 188.4
1815 Male, age 53, unknown 173.0
2273 Male, age 74, both hemispheres 157.6
2667 Female, age 75, unknown 157.1
2224 Female, age 72, unknown 152.8
2407 Male, age 75, both hemispheres 129.7
2825 Male, age 18, unknown 121.6
2316 Male, age 76, right hemisphere 120.2
Red nucleus
nTPM: 155.9
1821 Female, age 72, unknown 231.1
2725 Female, age 75, unknown 175.6
2785 Male, age 18, unknown 153.2
1865 Male, age 51, unknown 152.2
1954 Female, age 42, unknown 150.6
2503 Female, age 72, unknown 149.3
2823 Male, age 76, right hemisphere 149.3
2769 Male, age 72, unknown 148.5
1904 Male, age 53, unknown 147.4
2227 Male, age 72, unknown 143.1
2588 Male, age 74, left hemisphere 137.1
2584 Male, age 75, left hemisphere 133.2
Substantia nigra
nTPM: 179.2
1941 Male, age 53, unknown 225.7
1916 Female, age 42, unknown 217.5
1851 Male, age 51, unknown 202.4
2241 Male, age 72, unknown 201.6
1889 Female, age 72, unknown 201.1
2590 Female, age 75, unknown 164.7
2409 Female, age 72, unknown 152.8
2699 Male, age 18, unknown 152.7
2665 Male, age 74, both hemispheres 145.0
2583 Male, age 75, right hemisphere 128.2
Superior colliculus
nTPM: 136.1
2587 Male, age 74, left hemisphere 158.0
2087 Female, age 72, unknown 157.6
2261 Male, age 18, unknown 153.1
1895 Male, age 76, right hemisphere 149.2
1913 Female, age 42, unknown 133.5
2668 Female, age 75, unknown 132.6
1796 Male, age 53, unknown 124.4
1995 Male, age 72, unknown 121.1
1839 Male, age 51, unknown 116.0
2664 Male, age 75, both hemispheres 115.5
Ventral tegmental area
nTPM: 158.4
2218 Male, age 76, both hemispheres 180.2
1915 Female, age 42, unknown 175.2
2410 Female, age 72, unknown 165.9
2223 Female, age 72, unknown 162.2
1942 Male, age 51, unknown 135.5
2021 Male, age 53, unknown 131.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 251.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 251.3
Samples: 139

Max nTPM: 556.9
Min nTPM: 79.1
Std nTPM: 73.4
Median nTPM: 243.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 556.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 490.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 437.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 419.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 414.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 403.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 396.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 378.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 373.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 356.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 353.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 210.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 210.0
FF:10158-103A5 76 years, female 210.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 236.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 164.1
Samples: 4

Max nTPM: 272.2
Min nTPM: 111.1
Sample A Female 272.2
Sample B Female 113.0
Sample C Male 159.9
Sample D Male 111.1
Midbrain
nTPM: 210.2
Samples: 4

Max nTPM: 273.9
Min nTPM: 147.7
Sample A Female 258.3
Sample B Female 160.7
Sample C Male 273.9
Sample D Male 147.7
Periaqueductal gray
nTPM: 130.1
Samples: 3

Max nTPM: 139.2
Min nTPM: 115.3
Sample B Female 139.2
Sample C Male 135.8
Sample D Male 115.3
Superior colliculi
nTPM: 236.2
Samples: 4

Max nTPM: 341.0
Min nTPM: 142.0
Sample A Female 280.2
Sample B Female 142.0
Sample C Male 341.0
Sample D Male 181.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 115.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 115.5
Samples: 4

Max nTPM: 126.0
Min nTPM: 104.5
Sample A Male 126.0
Sample B Male 114.8
Sample C Female 104.5
Sample D Female 116.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
68441640 Antisense, RP_041214_02_G04, Mouse strain C57BL/6J (56 days, male) 4.3
71015350 Antisense, RP_050725_02_G06, Mouse strain C57BL/6J (56 days, male) 3.9

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