We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
13.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 13.0
Samples: 152
Max nTPM: 24.0
Min nTPM: 7.5
Std nTPM: 2.6
Median nTPM: 12.9
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
24.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
22.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
21.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
19.3
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
19.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
18.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
18.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
17.5
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
17.4
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
17.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
17.2
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
17.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
16.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
16.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
16.6
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
16.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
16.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
16.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
16.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
16.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
15.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
15.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
14.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
14.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
14.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
14.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
14.6
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
14.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
14.6
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
14.6
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
14.5
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
14.5
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
14.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
14.4
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
14.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
14.2
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
14.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
14.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
14.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
14.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
14.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
14.0
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
14.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
14.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
13.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
13.9
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
13.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
13.9
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
13.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
13.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
13.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
13.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
13.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
13.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
13.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
13.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
13.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
13.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
13.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
13.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
13.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
13.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
13.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
13.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
13.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
13.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
13.2
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
13.2
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
13.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
13.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
13.1
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
13.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
13.1
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
13.1
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
13.0
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
12.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
12.9
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
12.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
12.7
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
12.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
12.7
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
12.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
12.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
12.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
12.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
12.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
12.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
12.5
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
12.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
12.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
12.3
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
12.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
12.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
12.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
12.2
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
12.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
12.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
12.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
12.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
11.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
11.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
11.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
11.8
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
11.8
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
11.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
11.7
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
11.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
11.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
11.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
11.4
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
11.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
11.3
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
11.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
11.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
11.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
11.2
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
11.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
11.1
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
11.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
11.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
11.1
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
11.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
11.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
11.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
11.0
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
10.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
10.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
10.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
10.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
10.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
10.8
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
10.7
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
10.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
10.5
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
10.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
10.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
10.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
10.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
10.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
10.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
9.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
9.5
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
9.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
9.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
8.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
8.7
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
8.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
8.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
7.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
7.5
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
7.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
7.5
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
35.9
Mouse sample
Sample description
nTPM
Amygdala nTPM: 35.9
Samples: 4
Max nTPM: 37.9
Min nTPM: 32.7
Sample A
Male
35.7
Sample B
Male
32.7
Sample C
Female
37.9
Sample D
Female
37.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
