HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:53.5 nTPM
HPA Brain:56.0 nTPM
GTEx:53.5 nTPM
FANTOM5:90.4 Scaled Tags Per Million
Pig:24.5 nTPM
Mouse:49.5 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016754
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 56.0
Sample id Sample description nTPM
Hippocampus
nTPM: 44.0
1898 Male, age 80, left hemisphere 54.3
1855 Male, age 76, left hemisphere 48.1
2621 Female, age 67, right hemisphere 42.7
2529 Female, age 94, left hemisphere 41.6
1911 Female, age 85, right hemisphere 38.7
2148 Female, age 91, left hemisphere 38.7
Dentate gyrus
nTPM: 42.3
2010 Male, age 76, both hemispheres 50.0
1927 Female, age 91, both hemispheres 46.8
2246 Female, age 85, both hemispheres 41.2
2530 Female, age 94, left hemisphere 41.2
2528 Male, age 74, both hemispheres 40.5
2531 Female, age 67, both hemispheres 33.8
Entorhinal gyrus
nTPM: 44.0
1938 Female, age 85, left hemisphere 54.1
1787 Male, age 76, left hemisphere 49.4
2764 Male, age 80, right hemisphere 47.6
2613 Female, age 94, left hemisphere 39.9
2686 Male, age 75, right hemisphere 36.4
2117 Female, age 91, right hemisphere 36.2
Hippocampus, CA1
nTPM: 47.7
2749 Male, age 80, left hemisphere 67.9
1873 Female, age 85, both hemispheres 50.7
2045 Male, age 76, both hemispheres 41.6
2527 Male, age 74, both hemispheres 39.7
2082 Female, age 91, right hemisphere 38.5
Hippocampus, CA2
nTPM: 48.0
1892 Male, age 76, both hemispheres 60.0
1963 Male, age 80, left hemisphere 56.3
2249 Male, age 74, both hemispheres 48.8
1940 Female, age 85, left hemisphere 45.9
2113 Female, age 91, right hemisphere 38.8
2437 Female, age 94, left hemisphere 38.2
Hippocampus, CA3
nTPM: 44.8
2137 Male, age 80, left hemisphere 55.7
2436 Male, age 74, both hemispheres 51.8
1867 Male, age 76, both hemispheres 51.7
1891 Female, age 85, both hemispheres 44.8
2620 Female, age 94, left hemisphere 37.3
2861 Female, age 67, both hemispheres 27.6
Parahippocampal cortex
nTPM: 45.3
1850 Male, age 80, both hemispheres 58.7
1933 Female, age 85, both hemispheres 53.4
1990 Female, age 91, right hemisphere 47.8
2018 Male, age 76, both hemispheres 47.0
2245 Female, age 91, both hemispheres 46.9
2250 Female, age 67, right hemisphere 43.6
2693 Female, age 94, both hemispheres 42.7
2532 Female, age 72, left hemisphere 41.4
2692 Male, age 74, both hemispheres 39.1
2622 Female, age 67, right hemisphere 31.8
Perirhinal gyrus
nTPM: 56.0
1847 Female, age 91, left hemisphere 66.8
1841 Female, age 85, right hemisphere 58.8
1794 Male, age 80, right hemisphere 57.5
2848 Male, age 76, right hemisphere 49.5
2521 Female, age 94, right hemisphere 47.2
Subiculum
nTPM: 42.3
1901 Male, age 80, both hemispheres 48.6
1977 Female, age 85, both hemispheres 48.0
2438 Female, age 94, left hemisphere 42.9
2042 Male, age 76, both hemispheres 41.3
2729 Female, age 91, right hemisphere 37.5
2619 Male, age 74, both hemispheres 35.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.5
Samples: 197

Max nTPM: 106.9
Min nTPM: 32.3
Std nTPM: 15.1
Median nTPM: 48.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 106.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 101.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 94.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 92.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 90.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 89.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 87.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 85.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 84.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 83.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 80.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 90.4
FF:10169-103B7 60 years, female 106.9
FF:10153-102I9 76 years, female 73.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 24.5
Pig sample Sample description nTPM
Subiculum
nTPM: 19.3
Samples: 4

Max nTPM: 23.3
Min nTPM: 16.4
Sample A Female 23.3
Sample B Female 20.1
Sample C Male 17.2
Sample D Male 16.4
Dorsal hippocampus
nTPM: 24.5
Samples: 4

Max nTPM: 29.5
Min nTPM: 20.9
Sample A Female 26.0
Sample B Female 29.5
Sample C Male 21.5
Sample D Male 20.9
Entorhinal cortex
nTPM: 19.8
Samples: 4

Max nTPM: 21.4
Min nTPM: 18.8
Sample A Female 18.8
Sample B Female 20.0
Sample C Male 21.4
Sample D Male 18.8
Ventral hippocampus
nTPM: 18.5
Samples: 4

Max nTPM: 20.1
Min nTPM: 16.8
Sample A Female 20.1
Sample B Female 17.9
Sample C Male 19.3
Sample D Male 16.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 49.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 43.7
Samples: 4

Max nTPM: 44.9
Min nTPM: 42.6
Sample A Male 44.9
Sample B Male 43.0
Sample C Female 44.4
Sample D Female 42.6
Hippocampal formation
nTPM: 49.5
Samples: 4

Max nTPM: 56.2
Min nTPM: 45.7
Sample A Male 56.2
Sample B Male 47.1
Sample C Female 48.9
Sample D Female 45.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
69549669 Antisense, RP_050317_04_D10, Mouse strain C57BL/6J (56 days, male) 1.1

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