MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.3 nTPM
HPA Brain:47.1 nTPM
GTEx:49.3 nTPM
FANTOM5:67.1 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:51.0 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.8
2019 Male, age 18, unknown 48.0
2411 Female, age 72, unknown 44.8
1827 Male, age 72, unknown 43.8
1870 Female, age 42, unknown 40.1
2219 Male, age 76, both hemispheres 39.6
1833 Male, age 53, unknown 39.0
1830 Male, age 51, unknown 37.1
2666 Male, age 74, left hemisphere 36.6
2828 Female, age 72, unknown 35.2
2586 Male, age 75, left hemisphere 33.3
Dorsal raphe nucleus
nTPM: 39.8
2298 Female, age 72, unknown 42.6
2750 Male, age 76, both hemispheres 40.7
1828 Male, age 53, unknown 40.5
2047 Male, age 72, unknown 38.5
2016 Female, age 72, unknown 36.5
Inferior colliculus
nTPM: 40.4
2097 Female, age 72, unknown 44.3
1890 Male, age 53, unknown 41.8
1848 Female, age 42, unknown 38.8
2849 Male, age 72, unknown 36.7
Median raphe nucleus
nTPM: 39.6
2220 Male, age 76, midline 39.6
Periaquaductal grey, anterior
nTPM: 42.9
1947 Male, age 18, unknown 45.6
2502 Female, age 75, unknown 42.9
1795 Male, age 51, unknown 40.3
Periaquaductal grey, dorsal
nTPM: 35.7
1840 Male, age 53, unknown 37.2
1831 Male, age 72, unknown 36.5
2850 Male, age 76, both hemispheres 35.0
2464 Female, age 72, unknown 33.9
Periaquaductal grey, lateral
nTPM: 35.0
2272 Male, age 74, both hemispheres 36.8
2053 Male, age 18, unknown 36.7
2140 Male, age 76, both hemispheres 31.5
Pretectal area
nTPM: 44.5
1816 Male, age 51, unknown 54.9
1817 Female, age 42, unknown 52.1
1944 Female, age 72, unknown 50.6
2007 Male, age 72, unknown 50.5
1815 Male, age 53, unknown 46.1
2667 Female, age 75, unknown 42.1
2224 Female, age 72, unknown 41.5
2273 Male, age 74, both hemispheres 39.9
2316 Male, age 76, right hemisphere 37.5
2407 Male, age 75, both hemispheres 37.4
2825 Male, age 18, unknown 36.9
Red nucleus
nTPM: 41.4
1821 Female, age 72, unknown 51.7
2725 Female, age 75, unknown 44.0
2584 Male, age 75, left hemisphere 42.1
1904 Male, age 53, unknown 41.8
2503 Female, age 72, unknown 40.8
2785 Male, age 18, unknown 40.8
2588 Male, age 74, left hemisphere 40.4
1865 Male, age 51, unknown 40.3
1954 Female, age 42, unknown 39.7
2823 Male, age 76, right hemisphere 39.5
2227 Male, age 72, unknown 37.9
2769 Male, age 72, unknown 37.5
Substantia nigra
nTPM: 47.1
1916 Female, age 42, unknown 54.5
2409 Female, age 72, unknown 54.2
2241 Male, age 72, unknown 53.4
1889 Female, age 72, unknown 48.8
1851 Male, age 51, unknown 48.7
1941 Male, age 53, unknown 48.7
2583 Male, age 75, right hemisphere 42.3
2590 Female, age 75, unknown 42.1
2665 Male, age 74, both hemispheres 39.3
2699 Male, age 18, unknown 38.8
Superior colliculus
nTPM: 39.2
1895 Male, age 76, right hemisphere 43.5
2668 Female, age 75, unknown 42.6
2261 Male, age 18, unknown 41.8
2587 Male, age 74, left hemisphere 41.2
2087 Female, age 72, unknown 40.4
1796 Male, age 53, unknown 39.1
1913 Female, age 42, unknown 39.0
1839 Male, age 51, unknown 36.9
1995 Male, age 72, unknown 35.7
2664 Male, age 75, both hemispheres 32.2
Ventral tegmental area
nTPM: 41.5
2410 Female, age 72, unknown 48.1
2218 Male, age 76, both hemispheres 42.9
1915 Female, age 42, unknown 42.7
2223 Female, age 72, unknown 42.0
1942 Male, age 51, unknown 39.2
2021 Male, age 53, unknown 34.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.3
Samples: 139

Max nTPM: 82.2
Min nTPM: 34.9
Std nTPM: 9.3
Median nTPM: 47.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 82.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 81.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 78.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 77.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 75.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 72.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 71.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 71.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 64.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 63.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 63.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.1
FF:10158-103A5 76 years, female 67.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.5
Samples: 4

Max nTPM: 31.4
Min nTPM: 18.6
Sample A Female 31.4
Sample B Female 18.6
Sample C Male 22.7
Sample D Male 21.1
Midbrain
nTPM: 24.2
Samples: 4

Max nTPM: 27.2
Min nTPM: 22.2
Sample A Female 27.2
Sample B Female 22.8
Sample C Male 24.5
Sample D Male 22.2
Periaqueductal gray
nTPM: 19.1
Samples: 3

Max nTPM: 20.8
Min nTPM: 17.7
Sample B Female 20.8
Sample C Male 17.7
Sample D Male 18.7
Superior colliculi
nTPM: 25.4
Samples: 4

Max nTPM: 27.5
Min nTPM: 23.1
Sample A Female 27.5
Sample B Female 26.9
Sample C Male 24.0
Sample D Male 23.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.0
Samples: 4

Max nTPM: 51.7
Min nTPM: 50.2
Sample A Male 50.2
Sample B Male 51.5
Sample C Female 50.6
Sample D Female 51.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69549669 Antisense, RP_050317_04_D10, Mouse strain C57BL/6J (56 days, male) 0.5

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