MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.9 nTPM
HPA Brain:324.1 nTPM
GTEx:106.9 nTPM
FANTOM5:318.8 Scaled Tags Per Million
Pig:60.3 nTPM
Mouse:33.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 324.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 274.5
2828 Female, age 72, unknown 406.9
2586 Male, age 75, left hemisphere 360.7
2666 Male, age 74, left hemisphere 288.7
1870 Female, age 42, unknown 285.1
1833 Male, age 53, unknown 268.9
2411 Female, age 72, unknown 265.2
1830 Male, age 51, unknown 261.8
2019 Male, age 18, unknown 255.3
1827 Male, age 72, unknown 239.9
2219 Male, age 76, both hemispheres 112.2
Dorsal raphe nucleus
nTPM: 262.5
2016 Female, age 72, unknown 330.0
1828 Male, age 53, unknown 297.8
2047 Male, age 72, unknown 264.6
2298 Female, age 72, unknown 244.8
2750 Male, age 76, both hemispheres 175.5
Inferior colliculus
nTPM: 265.8
1848 Female, age 42, unknown 280.6
1890 Male, age 53, unknown 276.0
2849 Male, age 72, unknown 264.9
2097 Female, age 72, unknown 241.8
Median raphe nucleus
nTPM: 159.4
2220 Male, age 76, midline 159.4
Periaquaductal grey, anterior
nTPM: 239.3
2502 Female, age 75, unknown 260.0
1947 Male, age 18, unknown 233.6
1795 Male, age 51, unknown 224.4
Periaquaductal grey, dorsal
nTPM: 275.4
2850 Male, age 76, both hemispheres 338.5
2464 Female, age 72, unknown 299.0
1840 Male, age 53, unknown 257.0
1831 Male, age 72, unknown 206.9
Periaquaductal grey, lateral
nTPM: 281.6
2140 Male, age 76, both hemispheres 353.7
2053 Male, age 18, unknown 285.9
2272 Male, age 74, both hemispheres 205.0
Pretectal area
nTPM: 220.7
2316 Male, age 76, right hemisphere 277.6
2825 Male, age 18, unknown 253.9
1817 Female, age 42, unknown 228.4
2407 Male, age 75, both hemispheres 224.4
1815 Male, age 53, unknown 223.9
2667 Female, age 75, unknown 216.5
1944 Female, age 72, unknown 214.4
2273 Male, age 74, both hemispheres 209.6
2224 Female, age 72, unknown 200.6
1816 Male, age 51, unknown 190.0
2007 Male, age 72, unknown 188.8
Red nucleus
nTPM: 324.1
1954 Female, age 42, unknown 391.4
2503 Female, age 72, unknown 383.6
2769 Male, age 72, unknown 365.5
2227 Male, age 72, unknown 358.2
1821 Female, age 72, unknown 349.1
1865 Male, age 51, unknown 336.9
1904 Male, age 53, unknown 323.9
2588 Male, age 74, left hemisphere 316.3
2725 Female, age 75, unknown 301.8
2785 Male, age 18, unknown 279.1
2823 Male, age 76, right hemisphere 263.7
2584 Male, age 75, left hemisphere 219.4
Substantia nigra
nTPM: 271.7
2409 Female, age 72, unknown 337.0
1916 Female, age 42, unknown 318.1
2699 Male, age 18, unknown 313.5
1851 Male, age 51, unknown 294.2
2590 Female, age 75, unknown 272.7
2241 Male, age 72, unknown 254.3
2583 Male, age 75, right hemisphere 247.9
2665 Male, age 74, both hemispheres 230.5
1889 Female, age 72, unknown 225.3
1941 Male, age 53, unknown 223.3
Superior colliculus
nTPM: 247.7
2664 Male, age 75, both hemispheres 328.8
1995 Male, age 72, unknown 326.3
1913 Female, age 42, unknown 259.4
1839 Male, age 51, unknown 248.7
1796 Male, age 53, unknown 245.8
2668 Female, age 75, unknown 237.4
2087 Female, age 72, unknown 219.2
2587 Male, age 74, left hemisphere 216.1
2261 Male, age 18, unknown 209.3
1895 Male, age 76, right hemisphere 185.7
Ventral tegmental area
nTPM: 244.5
2410 Female, age 72, unknown 301.2
1915 Female, age 42, unknown 275.7
1942 Male, age 51, unknown 253.2
2021 Male, age 53, unknown 238.3
2223 Female, age 72, unknown 216.3
2218 Male, age 76, both hemispheres 182.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 106.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 106.9
Samples: 139

Max nTPM: 348.1
Min nTPM: 19.6
Std nTPM: 54.1
Median nTPM: 94.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 348.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 293.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 274.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 255.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 247.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 247.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 231.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 227.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 206.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 200.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 198.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 318.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 318.8
FF:10158-103A5 76 years, female 318.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.0
Samples: 4

Max nTPM: 56.5
Min nTPM: 46.7
Sample A Female 56.5
Sample B Female 50.3
Sample C Male 50.5
Sample D Male 46.7
Midbrain
nTPM: 59.5
Samples: 4

Max nTPM: 118.0
Min nTPM: 30.4
Sample A Female 118.0
Sample B Female 44.1
Sample C Male 45.6
Sample D Male 30.4
Periaqueductal gray
nTPM: 60.3
Samples: 3

Max nTPM: 63.9
Min nTPM: 56.3
Sample B Female 60.6
Sample C Male 63.9
Sample D Male 56.3
Superior colliculi
nTPM: 45.4
Samples: 4

Max nTPM: 48.1
Min nTPM: 43.0
Sample A Female 47.4
Sample B Female 48.1
Sample C Male 43.0
Sample D Male 43.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.3
Samples: 4

Max nTPM: 35.7
Min nTPM: 30.2
Sample A Male 35.7
Sample B Male 33.0
Sample C Female 30.2
Sample D Female 34.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69735640 Antisense, RP_050503_03_B11, Mouse strain C57BL/6J (56 days, male) 0.6
73520992 Antisense, RP_051101_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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