PONS AND MEDULLA - Expression summary
Mouse brain, Intensity
Ponsi 		60.763
RNA expressioni
HPA Brain:151.5 nTPM
FANTOM5:121.1 Scaled Tags Per Million
Pig:58.3 nTPM
Mouse:75.7 nTPM
Allen mouse:11.5 Expression energy

PONS - Mouse brain profilei , antibody HPA063655
Pons mean intensity 60.763
intensityi
FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 34.003
Parabrachial nucleus 15.634
Principle sensory trigeminal nucleus 48.200
Locus coeruleus 57.011
Pontine nucleus 28.371
Vestibular nucleus 16.816
Pontine reticular nucleus, oral 36.123
Lateral lemniscus 44.461
Superior paraolivary nucleus 39.315

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 151.5
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 53.3
1984 Male, age 76, both hemispheres 94.0
2301 Female, age 85, both hemispheres 55.9
2188 Female, age 91, both hemispheres 35.6
2090 Male, age 80, both hemispheres 27.8
Area postrema
nTPM: 18.6
2054 Male, age 76, both hemispheres 32.5
2306 Male, age 80, both hemispheres 17.7
2799 Male, age 61, both hemispheres 5.5
Dorsal cochlear nucleus
nTPM: 41.3
2058 Male, age 76, both hemispheres 55.7
2370 Male, age 61, both hemispheres 48.5
2378 Male, age 80, both hemispheres 38.5
2802 Male, age 74, right hemisphere 36.0
2187 Female, age 91, both hemispheres 27.6
Dorsal medullary reticular nucleus
nTPM: 62.7
2040 Female, age 85, both hemispheres 69.7
2088 Male, age 76, both hemispheres 66.3
2373 Male, age 61, both hemispheres 52.0
Dorsal motor vagal complex
nTPM: 35.0
2133 Female, age 91, both hemispheres 80.0
2000 Male, age 74, unknown 62.7
2185 Male, age 76, both hemispheres 49.5
2797 Male, age 61, both hemispheres 20.0
2807 Female, age 85, both hemispheres 19.6
2813 Female, age 72, unknown 18.0
2844 Male, age 55, unknown 15.7
2643 Male, age 74, both hemispheres 14.7
Dorsal tegmental nucleus
nTPM: 38.8
2083 Male, age 80, both hemispheres 55.9
1936 Male, age 76, left hemisphere 51.3
2358 Male, age 61, both hemispheres 28.4
2326 Male, age 74, both hemispheres 19.4
Dorsolateral tegmental area
nTPM: 28.8
2654 Male, age 80, both hemispheres 54.0
2751 Female, age 85, both hemispheres 39.6
2360 Male, age 74, both hemispheres 20.1
2141 Male, age 76, both hemispheres 19.9
2337 Male, age 61, both hemispheres 10.3
Gigantocellular reticular nuclei, medullary
nTPM: 89.9
2462 Male, age 74, both hemispheres 232.0
2022 Male, age 76, right hemisphere 79.2
2310 Male, age 80, both hemispheres 75.5
1876 Female, age 85, both hemispheres 65.5
2387 Female, age 91, both hemispheres 55.1
2314 Male, age 61, both hemispheres 32.3
Gigantocellular reticular nuclei, pars
nTPM: 93.3
2168 Male, age 76, both hemispheres 159.6
2084 Female, age 85, both hemispheres 87.0
2330 Male, age 80, both hemispheres 76.6
2706 Male, age 80, both hemispheres 75.3
2336 Male, age 61, both hemispheres 67.9
Inferior olive
nTPM: 22.8
2628 Female, age 91, both hemispheres 38.1
2085 Female, age 85, both hemispheres 28.6
2178 Male, age 61, both hemispheres 18.8
2379 Male, age 80, both hemispheres 17.9
2563 Male, age 74, both hemispheres 10.4
Kolliker-Fuse nucleus
nTPM: 76.4
2163 Male, age 80, both hemispheres 116.8
2793 Female, age 91, left hemisphere 77.8
2315 Male, age 76, right hemisphere 34.6
Lateral lemniscal nuclei
nTPM: 139.9
2169 Male, age 76, both hemispheres 173.8
2453 Male, age 74, right hemisphere 168.7
2036 Male, age 80, both hemispheres 145.3
2746 Female, age 85, left hemisphere 120.2
2320 Female, age 91, left hemisphere 91.3
Lateral medullary reticular nucleus
nTPM: 47.3
2044 Male, age 76, both hemispheres 116.0
2804 Female, age 91, both hemispheres 49.8
2374 Male, age 61, both hemispheres 35.4
2190 Female, age 85, both hemispheres 32.9
2852 Male, age 80, both hemispheres 29.3
2305 Male, age 74, both hemispheres 20.3
Lateral parabrachial nucleus
nTPM: 69.7
2139 Female, age 85, right hemisphere 135.0
2013 Male, age 80, both hemispheres 76.1
2790 Male, age 61, both hemispheres 43.4
2792 Male, age 76, both hemispheres 24.4
Lateral vestibular nucleus
nTPM: 78.7
2184 Male, age 76, both hemispheres 111.4
2311 Male, age 80, both hemispheres 46.0
Locus coeruleus
nTPM: 30.1
2123 Female, age 91, both hemispheres 50.5
2720 Male, age 74, both hemispheres 32.9
2162 Male, age 80, both hemispheres 28.2
2317 Female, age 72, unknown 27.1
2788 Male, age 74, unknown 25.9
2014 Male, age 55, unknown 23.7
1980 Male, age 76, both hemispheres 22.7
Medial olivary nucleus
nTPM: 18.1
2851 Male, age 80, both hemispheres 35.6
1962 Male, age 76, both hemispheres 17.7
2138 Female, age 91, both hemispheres 12.6
1943 Male, age 61, both hemispheres 6.4
Medial parabrachial nucleus
nTPM: 56.7
2854 Male, age 80, both hemispheres 74.6
2156 Male, age 61, both hemispheres 70.6
2463 Female, age 85, right hemisphere 54.2
2786 Male, age 76, both hemispheres 53.0
2170 Female, age 91, both hemispheres 31.2
Medial periolivary nuclei
nTPM: 123.5
2171 Female, age 85, both hemispheres 203.3
2063 Male, age 76, both hemispheres 179.2
2791 Male, age 74, right hemisphere 107.4
2458 Female, age 91, both hemispheres 67.2
2081 Male, age 80, both hemispheres 60.3
Medial vestibular nucleus
nTPM: 94.3
2093 Male, age 80, both hemispheres 131.8
2624 Male, age 61, both hemispheres 105.8
2803 Female, age 91, both hemispheres 100.5
2134 Male, age 76, both hemispheres 97.4
2743 Female, age 85, both hemispheres 65.3
2801 Male, age 74, both hemispheres 65.1
Motor facial nucleus
nTPM: 115.3
2062 Male, age 76, both hemispheres 187.0
2365 Male, age 74, right hemisphere 147.0
2327 Male, age 80, both hemispheres 115.4
2795 Female, age 91, both hemispheres 94.5
2697 Female, age 85, both hemispheres 87.9
2126 Male, age 61, both hemispheres 60.0
Motor hypoglossal nucleus
nTPM: 66.3
2125 Female, age 91, both hemispheres 103.5
2132 Female, age 85, both hemispheres 90.8
2461 Male, age 61, both hemispheres 88.0
2182 Male, age 80, both hemispheres 40.3
2277 Male, age 76, both hemispheres 8.9
Motor trigeminal nucleus
nTPM: 82.1
2079 Male, age 80, both hemispheres 131.1
2560 Male, age 74, both hemispheres 104.6
2309 Male, age 76, both hemispheres 76.2
2335 Male, age 61, both hemispheres 54.6
2321 Female, age 91, both hemispheres 44.1
Nuclei of the trapezoid body
nTPM: 151.5
2159 Male, age 61, both hemispheres 209.2
2735 Female, age 85, both hemispheres 187.6
1983 Male, age 76, both hemispheres 171.6
2368 Female, age 91, both hemispheres 97.5
2166 Male, age 80, both hemispheres 91.5
Nucleus ambiguus
nTPM: 57.5
2096 Female, age 85, both hemispheres 95.9
2071 Male, age 76, both hemispheres 19.2
Nucleus cuneatus
nTPM: 60.0
2100 Male, age 76, both hemispheres 156.1
2131 Male, age 76, both hemispheres 139.6
2564 Male, age 74, both hemispheres 62.1
2376 Male, age 61, both hemispheres 43.3
2381 Male, age 80, both hemispheres 36.0
2562 Male, age 61, both hemispheres 31.2
2808 Female, age 85, both hemispheres 27.2
2380 Male, age 80, both hemispheres 22.5
2805 Female, age 91, both hemispheres 22.2
Nucleus gracilis
nTPM: 22.1
2627 Male, age 74, both hemispheres 25.9
2299 Female, age 85, both hemispheres 23.9
2382 Male, age 80, both hemispheres 16.6
Nucleus raphe magnus
nTPM: 147.2
2172 Female, age 85, both hemispheres 201.4
2455 Male, age 74, both hemispheres 185.5
2160 Male, age 61, both hemispheres 176.8
2051 Male, age 76, both hemispheres 124.1
2328 Male, age 80, both hemispheres 105.1
2459 Female, age 91, both hemispheres 90.0
Nucleus raphe obscurus
nTPM: 31.8
2800 Male, age 61, midline 55.0
2845 Female, age 85, midline 35.2
2142 Male, age 76, midline 5.1
Nucleus raphe pallidus
nTPM: 26.2
2183 Male, age 80, midline 34.6
1924 Male, age 61, midline 32.5
2145 Male, age 76, midline 11.3
Nucleus tractus solitarii
nTPM: 40.5
2144 Female, age 91, right hemisphere 90.3
2191 Female, age 85, both hemispheres 40.7
2307 Male, age 80, both hemispheres 15.8
2656 Male, age 76, both hemispheres 15.5
Paramedian reticular nucleus
nTPM: 72.4
2050 Female, age 85, both hemispheres 112.7
2057 Male, age 80, both hemispheres 72.8
2313 Male, age 61, both hemispheres 58.4
2052 Male, age 76, both hemispheres 45.7
Parvicellular reticular nuclei
nTPM: 115.7
2558 Male, age 74, both hemispheres 182.3
2095 Male, age 76, both hemispheres 92.1
2119 Male, age 80, both hemispheres 72.6
Parvicellular reticular nuclei, medullary
nTPM: 71.7
2189 Female, age 91, both hemispheres 85.5
2091 Female, age 85, both hemispheres 80.0
2181 Male, age 80, left hemisphere 49.7
Pedunculopontine tegmental nucleus
nTPM: 38.1
1921 Female, age 85, both hemispheres 47.2
2338 Male, age 61, both hemispheres 38.8
2334 Male, age 80, both hemispheres 28.4
Peritrigeminal nucleus
nTPM: 81.0
2136 Male, age 76, both hemispheres 95.8
2067 Female, age 85, both hemispheres 74.5
2179 Male, age 61, both hemispheres 72.6
Pontine nuclei
nTPM: 120.9
2787 Female, age 85, both hemispheres 194.3
1968 Male, age 76, left hemisphere 171.7
2727 Male, age 61, right hemisphere 152.7
1863 Male, age 55, unknown 143.1
2109 Female, age 72, unknown 90.6
2115 Male, age 80, left hemisphere 82.9
2454 Male, age 74, left hemisphere 80.5
2319 Female, age 91, both hemispheres 51.2
Pontine raphe nucleus
nTPM: 66.1
2122 Female, age 85, midline 122.7
2853 Male, age 76, midline 9.5
Posteroventral cochlear nucleus
nTPM: 49.7
2752 Female, age 85, both hemispheres 83.5
2070 Male, age 76, both hemispheres 69.2
2371 Male, age 61, both hemispheres 46.9
2341 Male, age 80, both hemispheres 42.0
2135 Female, age 91, both hemispheres 7.1
Prepositus hypoglossal nucleus
nTPM: 59.0
2855 Female, age 85, right hemisphere 71.2
2086 Male, age 80, both hemispheres 46.9
Principal sensory trigeminal nucleus
nTPM: 113.5
2158 Male, age 61, both hemispheres 152.6
2008 Male, age 80, left hemisphere 141.1
2324 Male, age 76, both hemispheres 93.4
2367 Female, age 91, left hemisphere 66.9
Reticular pontine nucleus, caudal
nTPM: 85.0
2332 Male, age 80, right hemisphere 136.6
2092 Male, age 76, both hemispheres 104.7
2457 Female, age 91, both hemispheres 65.9
2559 Male, age 74, both hemispheres 32.6
Reticular pontine nucleus, oral
nTPM: 73.3
2361 Male, age 74, both hemispheres 119.9
2012 Female, age 85, both hemispheres 97.6
2366 Female, age 91, both hemispheres 57.5
1939 Male, age 80, both hemispheres 46.0
2167 Male, age 76, both hemispheres 45.6
Reticulotegmental nucleus
nTPM: 71.6
2325 Male, age 76, both hemispheres 94.1
2333 Male, age 80, both hemispheres 72.4
2452 Male, age 74, both hemispheres 71.2
2322 Female, age 91, both hemispheres 48.6
Spinal trigeminal nucleus, caudal
nTPM: 78.3
2390 Female, age 91, both hemispheres 142.2
2447 Male, age 76, both hemispheres 134.8
2312 Male, age 61, both hemispheres 42.8
2308 Male, age 80, both hemispheres 40.2
2642 Male, age 74, both hemispheres 31.6
Spinal trigeminal nucleus, interpolar
nTPM: 115.8
2625 Male, age 61, both hemispheres 193.1
2066 Male, age 76, right hemisphere 154.9
2389 Female, age 91, both hemispheres 89.9
2386 Female, age 85, both hemispheres 72.3
2033 Male, age 80, both hemispheres 69.0
Spinal trigeminal nucleus, oral
nTPM: 81.9
2164 Male, age 80, both hemispheres 99.2
2737 Female, age 85, both hemispheres 93.9
1978 Male, age 76, both hemispheres 52.5
Spinal vestibular nucleus
nTPM: 78.9
2186 Female, age 91, both hemispheres 109.2
2780 Male, age 80, both hemispheres 95.9
2796 Male, age 61, both hemispheres 85.2
2748 Male, age 76, both hemispheres 82.7
2806 Female, age 85, both hemispheres 72.1
2384 Male, age 74, both hemispheres 28.1
Subcoeruleus area
nTPM: 55.5
2089 Male, age 76, left hemisphere 118.8
1958 Male, age 80, both hemispheres 88.3
2323 Female, age 91, left hemisphere 32.1
2369 Female, age 85, left hemisphere 19.5
2451 Male, age 74, both hemispheres 18.6
Superior olive
nTPM: 105.2
1875 Female, age 85, both hemispheres 142.4
2020 Male, age 76, both hemispheres 104.2
2364 Male, age 74, right hemisphere 96.6
2561 Female, age 91, both hemispheres 95.4
2329 Male, age 80, right hemisphere 87.4
Superior vestibular nucleus
nTPM: 39.6
2015 Male, age 80, both hemispheres 60.9
2061 Male, age 76, both hemispheres 37.5
2383 Male, age 74, both hemispheres 20.4
Ventral medullary reticular nucleus
nTPM: 47.6
2060 Male, age 76, both hemispheres 60.2
2372 Male, age 61, both hemispheres 35.0
Ventral periolivary nuclei
nTPM: 133.8
2130 Female, age 85, both hemispheres 172.9
2165 Male, age 80, both hemispheres 141.2
2794 Female, age 91, left hemisphere 124.4
2023 Male, age 76, both hemispheres 96.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 66.7
1986 Male, age 76, both hemispheres 110.0
2741 Female, age 85, both hemispheres 92.3
2302 Female, age 91, both hemispheres 59.1
2180 Male, age 61, both hemispheres 40.6
2118 Male, age 80, both hemispheres 31.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 88.5
2449 Male, age 74, both hemispheres 158.8
1959 Male, age 76, both hemispheres 112.1
2840 Female, age 85, both hemispheres 94.2
2161 Male, age 80, both hemispheres 84.6
2456 Female, age 91, both hemispheres 54.4
2359 Male, age 61, both hemispheres 27.1

PONS AND MEDULLA - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 68.9
FF:10182-103D2 60 years, female 117.2
FF:10165-103B3 76 years, female 20.7
Medulla oblongata
Scaled Tags Per Million: 30.6
FF:10038-101F2 18-64 years, mixed 53.7
FF:10155-103A2 76 years, female 20.3
FF:10174-103C3 60 years, female 17.9
Pons
Scaled Tags Per Million: 121.1
FF:10033-101E6 18-54 years, mixed 121.1

PONS AND MEDULLA - Pig RNA-seqi
Average nTPM 58.3
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 58.3
Samples: 4

Max nTPM: 80.2
Min nTPM: 11.7
Sample A Female 69.6
Sample B Female 80.2
Sample C Male 71.5
Sample D Male 11.7
Pons
nTPM: 38.4
Samples: 4

Max nTPM: 91.0
Min nTPM: 19.3
Sample A Female 21.8
Sample B Female 19.3
Sample C Male 21.6
Sample D Male 91.0

PONS AND MEDULLA - Mouse RNA-seqi
Average nTPM 75.7
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 75.7
Samples: 4

Max nTPM: 81.9
Min nTPM: 67.3
Sample A Male 78.0
Sample B Male 81.9
Sample C Female 67.3
Sample D Female 75.7

PONS AND MEDULLA - Allen Mouse ISHi
Max Expression energy 11.5
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 11.5
1023 Antisense, RP_040526_02_F08, Mouse strain C57BL/6J (56 days, male) 18.8
77454656 Antisense, RP_070129_01_B12, Mouse strain C57BL/6J (56 days, male) 14.3
71152527 Antisense, RP_050719_04_B09, Mouse strain C57BL/6J (56 days, male) 12.8
1025 Sense, RPS_Baylor_37050, Mouse strain C57BL/6J (56 days, male) 0.0
Pons
Expression energy: 9.9
1023 Antisense, RP_040526_02_F08, Mouse strain C57BL/6J (56 days, male) 18.8
77454656 Antisense, RP_070129_01_B12, Mouse strain C57BL/6J (56 days, male) 10.4
71152527 Antisense, RP_050719_04_B09, Mouse strain C57BL/6J (56 days, male) 10.3
1025 Sense, RPS_Baylor_37050, Mouse strain C57BL/6J (56 days, male) 0.0

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