MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.6 nTPM
HPA Brain:17.4 nTPM
GTEx:2.6 nTPM
FANTOM5:0.7 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:10.4 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 10.1
2219 Male, age 76, both hemispheres 21.1
2019 Male, age 18, unknown 17.6
2666 Male, age 74, left hemisphere 15.3
1827 Male, age 72, unknown 9.7
2586 Male, age 75, left hemisphere 9.4
2828 Female, age 72, unknown 8.4
2411 Female, age 72, unknown 6.0
1870 Female, age 42, unknown 5.7
1830 Male, age 51, unknown 4.7
1833 Male, age 53, unknown 2.8
Dorsal raphe nucleus
nTPM: 3.4
1828 Male, age 53, unknown 4.9
2047 Male, age 72, unknown 3.6
2016 Female, age 72, unknown 3.1
2298 Female, age 72, unknown 2.8
2750 Male, age 76, both hemispheres 2.7
Inferior colliculus
nTPM: 6.6
2097 Female, age 72, unknown 9.3
1890 Male, age 53, unknown 6.5
1848 Female, age 42, unknown 6.3
2849 Male, age 72, unknown 4.3
Median raphe nucleus
nTPM: 3.3
2220 Male, age 76, midline 3.3
Periaquaductal grey, anterior
nTPM: 10.8
1795 Male, age 51, unknown 13.5
1947 Male, age 18, unknown 11.6
2502 Female, age 75, unknown 7.4
Periaquaductal grey, dorsal
nTPM: 5.1
1831 Male, age 72, unknown 8.7
2464 Female, age 72, unknown 4.9
2850 Male, age 76, both hemispheres 3.5
1840 Male, age 53, unknown 3.2
Periaquaductal grey, lateral
nTPM: 4.9
2053 Male, age 18, unknown 6.5
2140 Male, age 76, both hemispheres 4.8
2272 Male, age 74, both hemispheres 3.4
Pretectal area
nTPM: 17.4
1816 Male, age 51, unknown 43.9
1944 Female, age 72, unknown 37.5
1817 Female, age 42, unknown 29.2
2007 Male, age 72, unknown 26.5
1815 Male, age 53, unknown 19.5
2667 Female, age 75, unknown 10.9
2407 Male, age 75, both hemispheres 5.6
2825 Male, age 18, unknown 5.5
2316 Male, age 76, right hemisphere 4.8
2224 Female, age 72, unknown 4.5
2273 Male, age 74, both hemispheres 3.7
Red nucleus
nTPM: 7.8
2785 Male, age 18, unknown 16.4
1821 Female, age 72, unknown 10.2
1865 Male, age 51, unknown 9.4
1954 Female, age 42, unknown 9.2
2823 Male, age 76, right hemisphere 7.9
1904 Male, age 53, unknown 6.9
2584 Male, age 75, left hemisphere 6.4
2588 Male, age 74, left hemisphere 6.4
2503 Female, age 72, unknown 6.2
2725 Female, age 75, unknown 5.8
2769 Male, age 72, unknown 4.5
2227 Male, age 72, unknown 4.3
Substantia nigra
nTPM: 8.8
1889 Female, age 72, unknown 21.5
1941 Male, age 53, unknown 20.4
2409 Female, age 72, unknown 8.2
2665 Male, age 74, both hemispheres 8.2
2590 Female, age 75, unknown 7.6
2241 Male, age 72, unknown 5.8
2583 Male, age 75, right hemisphere 5.8
1851 Male, age 51, unknown 5.3
1916 Female, age 42, unknown 4.5
2699 Male, age 18, unknown 1.1
Superior colliculus
nTPM: 12.3
2087 Female, age 72, unknown 31.3
2668 Female, age 75, unknown 19.5
1913 Female, age 42, unknown 15.2
2261 Male, age 18, unknown 14.3
1995 Male, age 72, unknown 10.2
1796 Male, age 53, unknown 9.1
1895 Male, age 76, right hemisphere 7.5
2587 Male, age 74, left hemisphere 6.5
1839 Male, age 51, unknown 5.5
2664 Male, age 75, both hemispheres 4.1
Ventral tegmental area
nTPM: 3.9
2410 Female, age 72, unknown 6.6
2223 Female, age 72, unknown 4.4
2218 Male, age 76, both hemispheres 4.3
1915 Female, age 42, unknown 3.3
2021 Male, age 53, unknown 2.4
1942 Male, age 51, unknown 2.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.6
Samples: 139

Max nTPM: 36.8
Min nTPM: 0.3
Std nTPM: 4.1
Median nTPM: 1.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 18.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 16.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 11.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 10.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 8.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 8.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 8.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 6.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 6.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.7
FF:10158-103A5 76 years, female 0.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.9
Samples: 4

Max nTPM: 5.7
Min nTPM: 2.5
Sample A Female 4.0
Sample B Female 3.2
Sample C Male 5.7
Sample D Male 2.5
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 10.0
Min nTPM: 4.0
Sample A Female 4.8
Sample B Female 4.0
Sample C Male 10.0
Sample D Male 8.2
Periaqueductal gray
nTPM: 3.6
Samples: 3

Max nTPM: 4.5
Min nTPM: 2.6
Sample B Female 2.6
Sample C Male 4.5
Sample D Male 3.7
Superior colliculi
nTPM: 11.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 7.6
Sample A Female 9.2
Sample B Female 7.6
Sample C Male 20.2
Sample D Male 9.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 11.3
Min nTPM: 10.0
Sample A Male 10.1
Sample B Male 11.3
Sample C Female 10.4
Sample D Female 10.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69407152 Antisense, RP_050414_01_A03, Mouse strain C57BL/6J (56 days, male) 3.5
72128752 Antisense, RP_051017_04_C08, Mouse strain C57BL/6J (56 days, male) 1.6

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