HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:43.0 nTPM
HPA Brain:41.6 nTPM
GTEx:43.0 nTPM
FANTOM5:129.5 Scaled Tags Per Million
Pig:60.8 nTPM
Mouse:119.7 nTPM
Allen mouse:10.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA049354Antibody CAB004567
Glial cells LowHigh
Neuronal cells MediumHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 41.6
Sample id Sample description nTPM
Hippocampus
nTPM: 39.5
1898 Male, age 80, left hemisphere 49.2
1855 Male, age 76, left hemisphere 44.2
2529 Female, age 94, left hemisphere 39.1
1911 Female, age 85, right hemisphere 37.7
2621 Female, age 67, right hemisphere 34.8
2148 Female, age 91, left hemisphere 32.2
Dentate gyrus
nTPM: 35.9
2010 Male, age 76, both hemispheres 45.5
1927 Female, age 91, both hemispheres 36.7
2246 Female, age 85, both hemispheres 36.3
2530 Female, age 94, left hemisphere 36.2
2528 Male, age 74, both hemispheres 34.4
2531 Female, age 67, both hemispheres 26.2
Entorhinal gyrus
nTPM: 34.8
1938 Female, age 85, left hemisphere 43.8
2117 Female, age 91, right hemisphere 39.7
1787 Male, age 76, left hemisphere 35.0
2764 Male, age 80, right hemisphere 32.9
2686 Male, age 75, right hemisphere 29.9
2613 Female, age 94, left hemisphere 27.4
Hippocampus, CA1
nTPM: 39.2
2749 Male, age 80, left hemisphere 45.2
1873 Female, age 85, both hemispheres 41.5
2527 Male, age 74, both hemispheres 40.0
2045 Male, age 76, both hemispheres 38.5
2082 Female, age 91, right hemisphere 30.9
Hippocampus, CA2
nTPM: 38.5
1892 Male, age 76, both hemispheres 44.0
2249 Male, age 74, both hemispheres 41.3
1940 Female, age 85, left hemisphere 38.7
1963 Male, age 80, left hemisphere 38.2
2113 Female, age 91, right hemisphere 35.1
2437 Female, age 94, left hemisphere 33.9
Hippocampus, CA3
nTPM: 36.5
1867 Male, age 76, both hemispheres 45.5
1891 Female, age 85, both hemispheres 41.9
2137 Male, age 80, left hemisphere 41.6
2436 Male, age 74, both hemispheres 39.6
2620 Female, age 94, left hemisphere 25.6
2861 Female, age 67, both hemispheres 24.6
Parahippocampal cortex
nTPM: 38.5
1850 Male, age 80, both hemispheres 46.7
1933 Female, age 85, both hemispheres 42.4
2250 Female, age 67, right hemisphere 42.1
2018 Male, age 76, both hemispheres 41.3
1990 Female, age 91, right hemisphere 38.2
2245 Female, age 91, both hemispheres 36.3
2693 Female, age 94, both hemispheres 36.2
2532 Female, age 72, left hemisphere 36.0
2692 Male, age 74, both hemispheres 36.0
2622 Female, age 67, right hemisphere 29.5
Perirhinal gyrus
nTPM: 41.6
1841 Female, age 85, right hemisphere 47.1
1847 Female, age 91, left hemisphere 45.9
1794 Male, age 80, right hemisphere 41.7
2521 Female, age 94, right hemisphere 39.2
2848 Male, age 76, right hemisphere 33.8
Subiculum
nTPM: 38.0
1977 Female, age 85, both hemispheres 41.0
1901 Male, age 80, both hemispheres 40.2
2042 Male, age 76, both hemispheres 39.8
2438 Female, age 94, left hemisphere 38.4
2729 Female, age 91, right hemisphere 35.5
2619 Male, age 74, both hemispheres 33.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.0
Samples: 197

Max nTPM: 91.7
Min nTPM: 26.4
Std nTPM: 6.9
Median nTPM: 42.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 91.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 62.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 60.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 58.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 57.8
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 57.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 55.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 55.2
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 55.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 54.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 53.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 129.5
FF:10169-103B7 60 years, female 137.0
FF:10153-102I9 76 years, female 122.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 60.8
Pig sample Sample description nTPM
Subiculum
nTPM: 56.3
Samples: 4

Max nTPM: 71.9
Min nTPM: 48.5
Sample A Female 71.9
Sample B Female 50.6
Sample C Male 48.5
Sample D Male 54.0
Dorsal hippocampus
nTPM: 60.9
Samples: 4

Max nTPM: 77.0
Min nTPM: 46.2
Sample A Female 77.0
Sample B Female 56.1
Sample C Male 64.2
Sample D Male 46.2
Entorhinal cortex
nTPM: 53.2
Samples: 4

Max nTPM: 59.4
Min nTPM: 46.0
Sample A Female 55.4
Sample B Female 59.4
Sample C Male 51.8
Sample D Male 46.0
Ventral hippocampus
nTPM: 54.2
Samples: 4

Max nTPM: 64.0
Min nTPM: 45.9
Sample A Female 64.0
Sample B Female 45.9
Sample C Male 49.8
Sample D Male 57.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 119.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 117.2
Samples: 4

Max nTPM: 118.5
Min nTPM: 113.8
Sample A Male 113.8
Sample B Male 118.4
Sample C Female 118.1
Sample D Female 118.5
Hippocampal formation
nTPM: 119.7
Samples: 4

Max nTPM: 125.5
Min nTPM: 109.6
Sample A Male 125.5
Sample B Male 118.6
Sample C Female 125.1
Sample D Female 109.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.0
67978388 Antisense, RP_040923_01_A09, Mouse strain C57BL/6J (56 days, male) 10.0

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