MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.8 nTPM
HPA Brain:51.8 nTPM
GTEx:50.8 nTPM
FANTOM5:120.0 Scaled Tags Per Million
Pig:81.2 nTPM
Mouse:141.3 nTPM
Allen mouse:10.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.7
1870 Female, age 42, unknown 50.3
2586 Male, age 75, left hemisphere 49.0
2411 Female, age 72, unknown 47.6
2019 Male, age 18, unknown 44.8
1833 Male, age 53, unknown 42.3
1830 Male, age 51, unknown 41.1
1827 Male, age 72, unknown 40.8
2666 Male, age 74, left hemisphere 39.2
2828 Female, age 72, unknown 36.8
2219 Male, age 76, both hemispheres 34.9
Dorsal raphe nucleus
nTPM: 44.8
1828 Male, age 53, unknown 46.9
2298 Female, age 72, unknown 45.8
2750 Male, age 76, both hemispheres 45.7
2047 Male, age 72, unknown 43.1
2016 Female, age 72, unknown 42.4
Inferior colliculus
nTPM: 43.9
2097 Female, age 72, unknown 48.0
1890 Male, age 53, unknown 46.7
1848 Female, age 42, unknown 43.3
2849 Male, age 72, unknown 37.6
Median raphe nucleus
nTPM: 48.4
2220 Male, age 76, midline 48.4
Periaquaductal grey, anterior
nTPM: 44.0
1947 Male, age 18, unknown 47.2
2502 Female, age 75, unknown 45.0
1795 Male, age 51, unknown 39.7
Periaquaductal grey, dorsal
nTPM: 41.8
2850 Male, age 76, both hemispheres 48.1
1840 Male, age 53, unknown 41.1
2464 Female, age 72, unknown 39.9
1831 Male, age 72, unknown 38.4
Periaquaductal grey, lateral
nTPM: 39.5
2140 Male, age 76, both hemispheres 42.9
2053 Male, age 18, unknown 38.4
2272 Male, age 74, both hemispheres 37.2
Pretectal area
nTPM: 44.5
1944 Female, age 72, unknown 50.9
1817 Female, age 42, unknown 49.2
2007 Male, age 72, unknown 48.4
1816 Male, age 51, unknown 47.8
1815 Male, age 53, unknown 47.7
2667 Female, age 75, unknown 45.3
2224 Female, age 72, unknown 44.6
2273 Male, age 74, both hemispheres 41.5
2407 Male, age 75, both hemispheres 38.8
2825 Male, age 18, unknown 38.0
2316 Male, age 76, right hemisphere 37.3
Red nucleus
nTPM: 45.3
1821 Female, age 72, unknown 53.7
1904 Male, age 53, unknown 49.3
1865 Male, age 51, unknown 48.6
2503 Female, age 72, unknown 47.7
1954 Female, age 42, unknown 46.8
2725 Female, age 75, unknown 46.8
2769 Male, age 72, unknown 45.3
2227 Male, age 72, unknown 44.4
2785 Male, age 18, unknown 42.8
2823 Male, age 76, right hemisphere 41.5
2588 Male, age 74, left hemisphere 39.0
2584 Male, age 75, left hemisphere 38.1
Substantia nigra
nTPM: 51.8
2241 Male, age 72, unknown 66.0
1916 Female, age 42, unknown 59.8
1851 Male, age 51, unknown 57.9
1889 Female, age 72, unknown 55.0
2409 Female, age 72, unknown 55.0
2699 Male, age 18, unknown 52.7
1941 Male, age 53, unknown 49.1
2583 Male, age 75, right hemisphere 41.7
2590 Female, age 75, unknown 41.0
2665 Male, age 74, both hemispheres 39.5
Superior colliculus
nTPM: 42.0
2668 Female, age 75, unknown 47.8
2261 Male, age 18, unknown 45.0
2087 Female, age 72, unknown 44.6
1913 Female, age 42, unknown 43.6
2587 Male, age 74, left hemisphere 43.4
1995 Male, age 72, unknown 40.8
1839 Male, age 51, unknown 39.4
2664 Male, age 75, both hemispheres 39.0
1796 Male, age 53, unknown 38.2
1895 Male, age 76, right hemisphere 38.0
Ventral tegmental area
nTPM: 48.2
2410 Female, age 72, unknown 52.9
1915 Female, age 42, unknown 50.8
2223 Female, age 72, unknown 49.7
2218 Male, age 76, both hemispheres 49.2
1942 Male, age 51, unknown 44.1
2021 Male, age 53, unknown 42.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.8
Samples: 139

Max nTPM: 83.7
Min nTPM: 33.1
Std nTPM: 8.3
Median nTPM: 49.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 83.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 75.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 68.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 68.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 67.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 66.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 66.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 66.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 65.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 65.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 64.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.0
FF:10158-103A5 76 years, female 120.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.5
Samples: 4

Max nTPM: 87.4
Min nTPM: 56.3
Sample A Female 87.4
Sample B Female 56.3
Sample C Male 68.0
Sample D Male 66.4
Midbrain
nTPM: 81.2
Samples: 4

Max nTPM: 108.3
Min nTPM: 68.6
Sample A Female 108.3
Sample B Female 70.2
Sample C Male 77.7
Sample D Male 68.6
Periaqueductal gray
nTPM: 61.8
Samples: 3

Max nTPM: 62.1
Min nTPM: 61.5
Sample B Female 61.8
Sample C Male 62.1
Sample D Male 61.5
Superior colliculi
nTPM: 73.4
Samples: 4

Max nTPM: 87.1
Min nTPM: 52.2
Sample A Female 87.1
Sample B Female 52.2
Sample C Male 81.8
Sample D Male 72.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.3
Samples: 4

Max nTPM: 144.7
Min nTPM: 136.9
Sample A Male 136.9
Sample B Male 144.0
Sample C Female 144.7
Sample D Female 139.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
67978388 Antisense, RP_040923_01_A09, Mouse strain C57BL/6J (56 days, male) 10.9

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