MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:35.0 nTPM
GTEx:16.1 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:34.8 nTPM
Mouse:56.7 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.9
1827 Male, age 72, unknown 32.3
2219 Male, age 76, both hemispheres 31.7
2411 Female, age 72, unknown 30.8
2019 Male, age 18, unknown 30.2
2666 Male, age 74, left hemisphere 28.9
2828 Female, age 72, unknown 25.8
1870 Female, age 42, unknown 25.6
1830 Male, age 51, unknown 24.7
1833 Male, age 53, unknown 24.4
2586 Male, age 75, left hemisphere 24.4
Dorsal raphe nucleus
nTPM: 30.1
2298 Female, age 72, unknown 34.9
2750 Male, age 76, both hemispheres 31.9
2047 Male, age 72, unknown 30.9
1828 Male, age 53, unknown 29.8
2016 Female, age 72, unknown 23.0
Inferior colliculus
nTPM: 24.6
2097 Female, age 72, unknown 29.5
1890 Male, age 53, unknown 24.5
1848 Female, age 42, unknown 22.2
2849 Male, age 72, unknown 22.1
Median raphe nucleus
nTPM: 35.0
2220 Male, age 76, midline 35.0
Periaquaductal grey, anterior
nTPM: 29.0
2502 Female, age 75, unknown 29.8
1795 Male, age 51, unknown 28.8
1947 Male, age 18, unknown 28.2
Periaquaductal grey, dorsal
nTPM: 25.4
1831 Male, age 72, unknown 27.3
2850 Male, age 76, both hemispheres 25.9
1840 Male, age 53, unknown 25.3
2464 Female, age 72, unknown 23.1
Periaquaductal grey, lateral
nTPM: 24.6
2272 Male, age 74, both hemispheres 25.2
2053 Male, age 18, unknown 25.0
2140 Male, age 76, both hemispheres 23.6
Pretectal area
nTPM: 33.1
1816 Male, age 51, unknown 47.6
1944 Female, age 72, unknown 42.6
2007 Male, age 72, unknown 41.2
1817 Female, age 42, unknown 36.2
1815 Male, age 53, unknown 35.0
2667 Female, age 75, unknown 32.6
2224 Female, age 72, unknown 32.2
2273 Male, age 74, both hemispheres 26.1
2825 Male, age 18, unknown 25.8
2316 Male, age 76, right hemisphere 23.5
2407 Male, age 75, both hemispheres 21.6
Red nucleus
nTPM: 24.9
1821 Female, age 72, unknown 28.1
2785 Male, age 18, unknown 27.2
2584 Male, age 75, left hemisphere 25.8
1865 Male, age 51, unknown 25.6
2503 Female, age 72, unknown 25.5
1954 Female, age 42, unknown 25.4
2725 Female, age 75, unknown 25.4
1904 Male, age 53, unknown 24.7
2588 Male, age 74, left hemisphere 24.4
2823 Male, age 76, right hemisphere 23.4
2227 Male, age 72, unknown 21.7
2769 Male, age 72, unknown 21.6
Substantia nigra
nTPM: 33.5
1916 Female, age 42, unknown 44.4
2241 Male, age 72, unknown 36.6
2409 Female, age 72, unknown 36.5
1941 Male, age 53, unknown 35.8
1889 Female, age 72, unknown 35.2
1851 Male, age 51, unknown 33.6
2665 Male, age 74, both hemispheres 32.6
2590 Female, age 75, unknown 28.2
2699 Male, age 18, unknown 26.7
2583 Male, age 75, right hemisphere 25.0
Superior colliculus
nTPM: 28.9
2087 Female, age 72, unknown 39.4
2261 Male, age 18, unknown 36.8
2668 Female, age 75, unknown 31.2
1796 Male, age 53, unknown 30.3
2587 Male, age 74, left hemisphere 28.7
1913 Female, age 42, unknown 28.3
1895 Male, age 76, right hemisphere 27.8
1839 Male, age 51, unknown 22.5
1995 Male, age 72, unknown 22.2
2664 Male, age 75, both hemispheres 21.4
Ventral tegmental area
nTPM: 29.7
2218 Male, age 76, both hemispheres 33.9
2410 Female, age 72, unknown 33.9
1915 Female, age 42, unknown 31.2
1942 Male, age 51, unknown 26.9
2021 Male, age 53, unknown 26.6
2223 Female, age 72, unknown 25.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 139

Max nTPM: 40.9
Min nTPM: 10.3
Std nTPM: 5.5
Median nTPM: 14.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 40.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 37.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 28.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 25.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 25.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 24.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 23.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.1
FF:10158-103A5 76 years, female 38.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.2
Samples: 4

Max nTPM: 41.1
Min nTPM: 19.2
Sample A Female 41.1
Sample B Female 25.2
Sample C Male 35.3
Sample D Male 19.2
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 51.1
Min nTPM: 24.5
Sample A Female 24.5
Sample B Female 28.5
Sample C Male 51.1
Sample D Male 32.2
Periaqueductal gray
nTPM: 22.5
Samples: 3

Max nTPM: 25.0
Min nTPM: 20.0
Sample B Female 22.4
Sample C Male 25.0
Sample D Male 20.0
Superior colliculi
nTPM: 34.8
Samples: 4

Max nTPM: 49.7
Min nTPM: 24.7
Sample A Female 34.0
Sample B Female 24.7
Sample C Male 49.7
Sample D Male 30.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.7
Samples: 4

Max nTPM: 58.8
Min nTPM: 55.3
Sample A Male 55.3
Sample B Male 57.1
Sample C Female 58.8
Sample D Female 55.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
75774684 Antisense, RP_060530_01_D09, Mouse strain C57BL/6J (56 days, male) 7.1
68080692 Antisense, RP_040929_01_E10, Mouse strain C57BL/6J (56 days, male) 1.8

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