HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:43.1 nTPM
HPA Brain:55.1 nTPM
GTEx:43.1 nTPM
FANTOM5:125.7 Scaled Tags Per Million
Pig:53.4 nTPM
Mouse:32.1 nTPM
Allen mouse:17.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051631
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 55.1
Sample id Sample description nTPM
Hippocampus
nTPM: 52.6
2621 Female, age 67, right hemisphere 59.6
2529 Female, age 94, left hemisphere 57.2
2148 Female, age 91, left hemisphere 55.4
1911 Female, age 85, right hemisphere 51.4
1898 Male, age 80, left hemisphere 47.4
1855 Male, age 76, left hemisphere 44.4
Dentate gyrus
nTPM: 52.7
2531 Female, age 67, both hemispheres 67.2
2530 Female, age 94, left hemisphere 60.2
2246 Female, age 85, both hemispheres 54.3
2010 Male, age 76, both hemispheres 50.8
1927 Female, age 91, both hemispheres 44.1
2528 Male, age 74, both hemispheres 39.7
Entorhinal gyrus
nTPM: 53.3
2686 Male, age 75, right hemisphere 74.0
2613 Female, age 94, left hemisphere 53.4
1938 Female, age 85, left hemisphere 50.7
2117 Female, age 91, right hemisphere 48.7
1787 Male, age 76, left hemisphere 47.9
2764 Male, age 80, right hemisphere 45.1
Hippocampus, CA1
nTPM: 50.3
2749 Male, age 80, left hemisphere 56.3
2527 Male, age 74, both hemispheres 52.8
1873 Female, age 85, both hemispheres 49.0
2045 Male, age 76, both hemispheres 47.5
2082 Female, age 91, right hemisphere 45.7
Hippocampus, CA2
nTPM: 45.2
2437 Female, age 94, left hemisphere 47.9
1940 Female, age 85, left hemisphere 47.0
2113 Female, age 91, right hemisphere 46.7
1892 Male, age 76, both hemispheres 45.8
1963 Male, age 80, left hemisphere 45.3
2249 Male, age 74, both hemispheres 38.4
Hippocampus, CA3
nTPM: 49.9
2861 Female, age 67, both hemispheres 70.8
2137 Male, age 80, left hemisphere 51.2
1891 Female, age 85, both hemispheres 48.2
1867 Male, age 76, both hemispheres 46.2
2620 Female, age 94, left hemisphere 45.8
2436 Male, age 74, both hemispheres 37.5
Parahippocampal cortex
nTPM: 55.1
2622 Female, age 67, right hemisphere 74.5
2532 Female, age 72, left hemisphere 63.2
2245 Female, age 91, both hemispheres 61.2
2692 Male, age 74, both hemispheres 58.9
1850 Male, age 80, both hemispheres 53.1
2693 Female, age 94, both hemispheres 50.4
1933 Female, age 85, both hemispheres 49.0
1990 Female, age 91, right hemisphere 48.7
2018 Male, age 76, both hemispheres 47.1
2250 Female, age 67, right hemisphere 45.1
Perirhinal gyrus
nTPM: 50.6
2848 Male, age 76, right hemisphere 54.3
1794 Male, age 80, right hemisphere 52.3
2521 Female, age 94, right hemisphere 50.5
1841 Female, age 85, right hemisphere 50.2
1847 Female, age 91, left hemisphere 45.6
Subiculum
nTPM: 54.8
2438 Female, age 94, left hemisphere 67.5
2042 Male, age 76, both hemispheres 58.6
1901 Male, age 80, both hemispheres 56.3
1977 Female, age 85, both hemispheres 51.0
2619 Male, age 74, both hemispheres 48.5
2729 Female, age 91, right hemisphere 46.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.1
Samples: 197

Max nTPM: 96.7
Min nTPM: 24.6
Std nTPM: 11.9
Median nTPM: 41.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 96.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 85.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 81.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 76.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 73.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 73.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 70.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 69.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 66.0
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 65.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 65.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 125.7
FF:10169-103B7 60 years, female 129.8
FF:10153-102I9 76 years, female 121.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 53.4
Pig sample Sample description nTPM
Subiculum
nTPM: 53.1
Samples: 4

Max nTPM: 59.3
Min nTPM: 50.6
Sample A Female 59.3
Sample B Female 50.6
Sample C Male 51.2
Sample D Male 51.1
Dorsal hippocampus
nTPM: 52.3
Samples: 4

Max nTPM: 56.1
Min nTPM: 48.8
Sample A Female 54.5
Sample B Female 49.9
Sample C Male 56.1
Sample D Male 48.8
Entorhinal cortex
nTPM: 53.4
Samples: 4

Max nTPM: 58.9
Min nTPM: 48.4
Sample A Female 48.4
Sample B Female 58.9
Sample C Male 52.2
Sample D Male 54.0
Ventral hippocampus
nTPM: 51.6
Samples: 4

Max nTPM: 53.5
Min nTPM: 49.2
Sample A Female 53.5
Sample B Female 49.2
Sample C Male 53.3
Sample D Male 50.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 32.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.0
Samples: 4

Max nTPM: 34.3
Min nTPM: 30.2
Sample A Male 33.2
Sample B Male 34.3
Sample C Female 30.3
Sample D Female 30.2
Hippocampal formation
nTPM: 32.2
Samples: 4

Max nTPM: 38.1
Min nTPM: 26.5
Sample A Male 30.9
Sample B Male 38.1
Sample C Female 33.1
Sample D Female 26.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.0
74578167 Antisense, RP_060208_02_G11, Mouse strain C57BL/6J (56 days, male) 17.0

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