MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.3 nTPM
HPA Brain:58.1 nTPM
GTEx:45.3 nTPM
FANTOM5:119.8 Scaled Tags Per Million
Pig:63.0 nTPM
Mouse:41.6 nTPM
Allen mouse:12.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.0
2666 Male, age 74, left hemisphere 60.4
1830 Male, age 51, unknown 59.9
1870 Female, age 42, unknown 55.2
1833 Male, age 53, unknown 54.8
2586 Male, age 75, left hemisphere 54.3
2219 Male, age 76, both hemispheres 52.8
1827 Male, age 72, unknown 51.5
2019 Male, age 18, unknown 51.2
2828 Female, age 72, unknown 50.9
2411 Female, age 72, unknown 48.9
Dorsal raphe nucleus
nTPM: 45.8
2750 Male, age 76, both hemispheres 54.0
1828 Male, age 53, unknown 47.1
2047 Male, age 72, unknown 45.1
2016 Female, age 72, unknown 44.4
2298 Female, age 72, unknown 38.3
Inferior colliculus
nTPM: 49.8
2849 Male, age 72, unknown 59.3
1848 Female, age 42, unknown 50.4
1890 Male, age 53, unknown 47.7
2097 Female, age 72, unknown 42.0
Median raphe nucleus
nTPM: 58.1
2220 Male, age 76, midline 58.1
Periaquaductal grey, anterior
nTPM: 48.9
2502 Female, age 75, unknown 49.4
1947 Male, age 18, unknown 49.3
1795 Male, age 51, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 48.9
2850 Male, age 76, both hemispheres 56.0
1831 Male, age 72, unknown 50.5
2464 Female, age 72, unknown 46.6
1840 Male, age 53, unknown 42.4
Periaquaductal grey, lateral
nTPM: 46.7
2140 Male, age 76, both hemispheres 55.6
2053 Male, age 18, unknown 47.6
2272 Male, age 74, both hemispheres 36.8
Pretectal area
nTPM: 50.0
2407 Male, age 75, both hemispheres 56.7
1815 Male, age 53, unknown 56.3
1944 Female, age 72, unknown 53.6
1816 Male, age 51, unknown 52.6
1817 Female, age 42, unknown 52.3
2825 Male, age 18, unknown 52.2
2316 Male, age 76, right hemisphere 50.3
2667 Female, age 75, unknown 49.2
2007 Male, age 72, unknown 48.5
2224 Female, age 72, unknown 44.9
2273 Male, age 74, both hemispheres 32.9
Red nucleus
nTPM: 56.6
2725 Female, age 75, unknown 67.8
2503 Female, age 72, unknown 62.9
2588 Male, age 74, left hemisphere 62.9
2584 Male, age 75, left hemisphere 62.5
2823 Male, age 76, right hemisphere 62.0
1904 Male, age 53, unknown 54.5
1865 Male, age 51, unknown 53.9
2227 Male, age 72, unknown 53.4
2785 Male, age 18, unknown 51.9
1954 Female, age 42, unknown 51.4
1821 Female, age 72, unknown 50.5
2769 Male, age 72, unknown 45.6
Substantia nigra
nTPM: 51.5
2665 Male, age 74, both hemispheres 59.4
2699 Male, age 18, unknown 56.1
2241 Male, age 72, unknown 54.9
1941 Male, age 53, unknown 52.3
2583 Male, age 75, right hemisphere 52.2
1889 Female, age 72, unknown 52.0
2409 Female, age 72, unknown 52.0
2590 Female, age 75, unknown 46.2
1851 Male, age 51, unknown 45.6
1916 Female, age 42, unknown 44.6
Superior colliculus
nTPM: 51.1
1913 Female, age 42, unknown 58.2
1895 Male, age 76, right hemisphere 56.2
1995 Male, age 72, unknown 53.7
1839 Male, age 51, unknown 51.4
1796 Male, age 53, unknown 49.8
2664 Male, age 75, both hemispheres 49.7
2587 Male, age 74, left hemisphere 48.7
2087 Female, age 72, unknown 48.5
2261 Male, age 18, unknown 48.3
2668 Female, age 75, unknown 46.7
Ventral tegmental area
nTPM: 48.1
2218 Male, age 76, both hemispheres 52.4
2223 Female, age 72, unknown 51.8
2021 Male, age 53, unknown 49.6
1942 Male, age 51, unknown 48.2
1915 Female, age 42, unknown 44.5
2410 Female, age 72, unknown 42.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.3
Samples: 139

Max nTPM: 110.3
Min nTPM: 24.7
Std nTPM: 12.3
Median nTPM: 44.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 110.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 79.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 75.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 71.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 71.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 70.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 66.6
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 65.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 65.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 62.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.8
FF:10158-103A5 76 years, female 119.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.7
Samples: 4

Max nTPM: 61.7
Min nTPM: 55.3
Sample A Female 57.5
Sample B Female 55.3
Sample C Male 60.2
Sample D Male 61.7
Midbrain
nTPM: 63.0
Samples: 4

Max nTPM: 71.6
Min nTPM: 56.5
Sample A Female 71.6
Sample B Female 62.9
Sample C Male 60.9
Sample D Male 56.5
Periaqueductal gray
nTPM: 56.6
Samples: 3

Max nTPM: 58.6
Min nTPM: 53.7
Sample B Female 58.6
Sample C Male 57.6
Sample D Male 53.7
Superior colliculi
nTPM: 56.9
Samples: 4

Max nTPM: 59.0
Min nTPM: 55.9
Sample A Female 56.2
Sample B Female 56.5
Sample C Male 55.9
Sample D Male 59.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.6
Samples: 4

Max nTPM: 44.0
Min nTPM: 37.2
Sample A Male 42.3
Sample B Male 44.0
Sample C Female 42.9
Sample D Female 37.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.4
74578167 Antisense, RP_060208_02_G11, Mouse strain C57BL/6J (56 days, male) 12.4

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