HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:55.3 nTPM
HPA Brain:51.3 nTPM
GTEx:55.3 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:18.3 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA027202
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.3
Sample id Sample description nTPM
Hippocampus
nTPM: 50.1
1911 Female, age 85, right hemisphere 56.6
2529 Female, age 94, left hemisphere 51.2
1898 Male, age 80, left hemisphere 49.7
2148 Female, age 91, left hemisphere 49.4
1855 Male, age 76, left hemisphere 47.0
2621 Female, age 67, right hemisphere 46.5
Dentate gyrus
nTPM: 46.0
2528 Male, age 74, both hemispheres 51.5
1927 Female, age 91, both hemispheres 51.0
2246 Female, age 85, both hemispheres 49.0
2010 Male, age 76, both hemispheres 44.2
2531 Female, age 67, both hemispheres 42.3
2530 Female, age 94, left hemisphere 38.1
Entorhinal gyrus
nTPM: 46.9
2117 Female, age 91, right hemisphere 55.5
2686 Male, age 75, right hemisphere 48.4
1938 Female, age 85, left hemisphere 46.8
2764 Male, age 80, right hemisphere 46.1
1787 Male, age 76, left hemisphere 44.8
2613 Female, age 94, left hemisphere 39.5
Hippocampus, CA1
nTPM: 50.9
1873 Female, age 85, both hemispheres 52.7
2527 Male, age 74, both hemispheres 52.7
2082 Female, age 91, right hemisphere 52.0
2045 Male, age 76, both hemispheres 49.9
2749 Male, age 80, left hemisphere 47.1
Hippocampus, CA2
nTPM: 51.3
1940 Female, age 85, left hemisphere 58.0
2113 Female, age 91, right hemisphere 56.7
2249 Male, age 74, both hemispheres 54.9
1963 Male, age 80, left hemisphere 48.1
1892 Male, age 76, both hemispheres 46.9
2437 Female, age 94, left hemisphere 42.9
Hippocampus, CA3
nTPM: 48.1
1891 Female, age 85, both hemispheres 54.5
2436 Male, age 74, both hemispheres 53.0
2137 Male, age 80, left hemisphere 50.4
1867 Male, age 76, both hemispheres 48.5
2620 Female, age 94, left hemisphere 44.0
2861 Female, age 67, both hemispheres 38.5
Parahippocampal cortex
nTPM: 49.1
2250 Female, age 67, right hemisphere 53.8
2693 Female, age 94, both hemispheres 53.5
2018 Male, age 76, both hemispheres 52.5
2692 Male, age 74, both hemispheres 51.8
1850 Male, age 80, both hemispheres 50.9
2532 Female, age 72, left hemisphere 50.9
2245 Female, age 91, both hemispheres 47.5
1933 Female, age 85, both hemispheres 46.1
1990 Female, age 91, right hemisphere 45.4
2622 Female, age 67, right hemisphere 38.7
Perirhinal gyrus
nTPM: 47.6
1841 Female, age 85, right hemisphere 51.7
1847 Female, age 91, left hemisphere 51.5
1794 Male, age 80, right hemisphere 49.5
2848 Male, age 76, right hemisphere 43.1
2521 Female, age 94, right hemisphere 42.1
Subiculum
nTPM: 49.1
2729 Female, age 91, right hemisphere 54.8
2042 Male, age 76, both hemispheres 54.6
1901 Male, age 80, both hemispheres 52.5
1977 Female, age 85, both hemispheres 47.7
2619 Male, age 74, both hemispheres 45.6
2438 Female, age 94, left hemisphere 39.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 55.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 55.3
Samples: 197

Max nTPM: 162.8
Min nTPM: 29.5
Std nTPM: 13.7
Median nTPM: 53.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 162.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 92.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 87.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 85.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 85.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 85.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 81.9
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 80.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 80.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 77.5
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 75.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.9
FF:10169-103B7 60 years, female 35.3
FF:10153-102I9 76 years, female 28.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Subiculum
nTPM: 3.5
Samples: 4

Max nTPM: 3.7
Min nTPM: 3.3
Sample A Female 3.7
Sample B Female 3.5
Sample C Male 3.3
Sample D Male 3.3
Dorsal hippocampus
nTPM: 3.7
Samples: 4

Max nTPM: 3.8
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 3.7
Sample C Male 3.8
Sample D Male 3.8
Entorhinal cortex
nTPM: 3.5
Samples: 4

Max nTPM: 3.7
Min nTPM: 3.2
Sample A Female 3.4
Sample B Female 3.6
Sample C Male 3.2
Sample D Male 3.7
Ventral hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.8
Sample A Female 3.9
Sample B Female 4.0
Sample C Male 2.8
Sample D Male 3.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.7
Samples: 4

Max nTPM: 18.9
Min nTPM: 14.4
Sample A Male 18.9
Sample B Male 17.7
Sample C Female 15.8
Sample D Female 14.4
Hippocampal formation
nTPM: 18.3
Samples: 4

Max nTPM: 19.7
Min nTPM: 16.6
Sample A Male 19.7
Sample B Male 18.1
Sample C Female 16.6
Sample D Female 18.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
68744612 Antisense, RP_050208_01_C04, Mouse strain C57BL/6J (56 days, male) 1.1
75259441 Antisense, RP_051214_02_E05, Mouse strain C57BL/6J (56 days, male) 0.4

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