MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:83.2 nTPM
HPA Brain:62.3 nTPM
GTEx:83.2 nTPM
FANTOM5:37.3 Scaled Tags Per Million
Pig:3.7 nTPM
Mouse:14.6 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.6
1830 Male, age 51, unknown 58.8
1827 Male, age 72, unknown 56.5
2019 Male, age 18, unknown 55.4
2411 Female, age 72, unknown 53.4
1870 Female, age 42, unknown 53.2
1833 Male, age 53, unknown 53.1
2828 Female, age 72, unknown 53.0
2666 Male, age 74, left hemisphere 46.7
2219 Male, age 76, both hemispheres 45.4
2586 Male, age 75, left hemisphere 40.1
Dorsal raphe nucleus
nTPM: 57.7
2016 Female, age 72, unknown 62.1
1828 Male, age 53, unknown 58.4
2750 Male, age 76, both hemispheres 57.4
2298 Female, age 72, unknown 56.4
2047 Male, age 72, unknown 54.0
Inferior colliculus
nTPM: 53.4
1890 Male, age 53, unknown 55.9
2097 Female, age 72, unknown 54.8
1848 Female, age 42, unknown 51.5
2849 Male, age 72, unknown 51.3
Median raphe nucleus
nTPM: 51.7
2220 Male, age 76, midline 51.7
Periaquaductal grey, anterior
nTPM: 51.5
1947 Male, age 18, unknown 56.5
1795 Male, age 51, unknown 49.7
2502 Female, age 75, unknown 48.4
Periaquaductal grey, dorsal
nTPM: 56.9
2850 Male, age 76, both hemispheres 66.3
1831 Male, age 72, unknown 57.2
1840 Male, age 53, unknown 52.8
2464 Female, age 72, unknown 51.3
Periaquaductal grey, lateral
nTPM: 62.3
2272 Male, age 74, both hemispheres 67.0
2140 Male, age 76, both hemispheres 64.2
2053 Male, age 18, unknown 55.5
Pretectal area
nTPM: 58.6
2273 Male, age 74, both hemispheres 69.3
2667 Female, age 75, unknown 64.0
2407 Male, age 75, both hemispheres 61.0
1815 Male, age 53, unknown 60.0
1944 Female, age 72, unknown 59.0
2224 Female, age 72, unknown 57.4
2316 Male, age 76, right hemisphere 55.9
2007 Male, age 72, unknown 55.4
2825 Male, age 18, unknown 55.2
1817 Female, age 42, unknown 53.8
1816 Male, age 51, unknown 53.3
Red nucleus
nTPM: 56.6
2823 Male, age 76, right hemisphere 68.0
1954 Female, age 42, unknown 63.5
1821 Female, age 72, unknown 62.4
1904 Male, age 53, unknown 60.8
1865 Male, age 51, unknown 60.4
2725 Female, age 75, unknown 58.8
2769 Male, age 72, unknown 57.5
2227 Male, age 72, unknown 52.2
2503 Female, age 72, unknown 52.0
2785 Male, age 18, unknown 51.8
2588 Male, age 74, left hemisphere 46.8
2584 Male, age 75, left hemisphere 45.2
Substantia nigra
nTPM: 60.3
2409 Female, age 72, unknown 68.7
2241 Male, age 72, unknown 66.2
2699 Male, age 18, unknown 63.4
1916 Female, age 42, unknown 63.3
1851 Male, age 51, unknown 61.5
1889 Female, age 72, unknown 58.4
2590 Female, age 75, unknown 58.3
1941 Male, age 53, unknown 55.8
2665 Male, age 74, both hemispheres 54.9
2583 Male, age 75, right hemisphere 52.5
Superior colliculus
nTPM: 54.1
1913 Female, age 42, unknown 59.8
1895 Male, age 76, right hemisphere 58.4
2261 Male, age 18, unknown 55.4
2087 Female, age 72, unknown 55.1
1796 Male, age 53, unknown 54.5
1995 Male, age 72, unknown 54.3
2664 Male, age 75, both hemispheres 52.5
2668 Female, age 75, unknown 51.6
2587 Male, age 74, left hemisphere 50.8
1839 Male, age 51, unknown 48.8
Ventral tegmental area
nTPM: 55.7
1915 Female, age 42, unknown 63.6
2218 Male, age 76, both hemispheres 60.2
1942 Male, age 51, unknown 55.2
2223 Female, age 72, unknown 52.3
2021 Male, age 53, unknown 52.0
2410 Female, age 72, unknown 50.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.2
Samples: 139

Max nTPM: 177.2
Min nTPM: 36.4
Std nTPM: 23.9
Median nTPM: 78.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 177.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 156.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 150.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 138.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 133.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 132.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 131.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 129.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 124.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 124.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.3
FF:10158-103A5 76 years, female 37.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 3.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 3.6
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.4
Sample A Female 4.1
Sample B Female 3.6
Sample C Male 3.4
Sample D Male 3.4
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.3
Sample A Female 3.6
Sample B Female 3.7
Sample C Male 3.3
Sample D Male 3.9
Periaqueductal gray
nTPM: 3.7
Samples: 3

Max nTPM: 3.9
Min nTPM: 3.6
Sample B Female 3.7
Sample C Male 3.9
Sample D Male 3.6
Superior colliculi
nTPM: 3.7
Samples: 4

Max nTPM: 4.2
Min nTPM: 2.9
Sample A Female 4.2
Sample B Female 2.9
Sample C Male 3.9
Sample D Male 3.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 19.0
Min nTPM: 11.8
Sample A Male 19.0
Sample B Male 14.8
Sample C Female 11.8
Sample D Female 12.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68744612 Antisense, RP_050208_01_C04, Mouse strain C57BL/6J (56 days, male) 0.7
75259441 Antisense, RP_051214_02_E05, Mouse strain C57BL/6J (56 days, male) 0.2

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